Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C1N79_RS29130 Genome accession   NZ_CP027297
Coordinates   6434750..6435430 (+) Length   226 a.a.
NCBI ID   WP_019330179.1    Uniprot ID   A0ABW1Y6Q7
Organism   Streptomyces sp. SGAir0924     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6429750..6440430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N79_RS29105 (C1N79_29130) alc 6430268..6431398 (+) 1131 WP_029394424.1 allantoicase -
  C1N79_RS29110 (C1N79_29135) - 6431606..6432409 (-) 804 WP_079126790.1 SDR family oxidoreductase -
  C1N79_RS29115 (C1N79_29140) - 6432578..6432973 (+) 396 WP_127443552.1 ribonuclease domain-containing protein -
  C1N79_RS29120 (C1N79_29145) - 6433004..6433204 (-) 201 WP_029394425.1 hypothetical protein -
  C1N79_RS29125 (C1N79_29150) - 6433383..6434630 (+) 1248 WP_031021315.1 histidine kinase -
  C1N79_RS29130 (C1N79_29155) vraR 6434750..6435430 (+) 681 WP_019330179.1 response regulator transcription factor Regulator
  C1N79_RS29135 (C1N79_29160) - 6435658..6436680 (-) 1023 WP_019330180.1 Gfo/Idh/MocA family oxidoreductase -
  C1N79_RS29140 (C1N79_29165) - 6436811..6437548 (+) 738 WP_078855183.1 myo-inositol degradation transcriptional regulator -
  C1N79_RS29145 (C1N79_29170) - 6437767..6438771 (+) 1005 WP_030978436.1 sugar ABC transporter substrate-binding protein -
  C1N79_RS29150 (C1N79_29175) - 6438768..6439814 (+) 1047 WP_046248708.1 ABC transporter permease -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 23985.56 Da        Isoelectric Point: 4.9970

>NTDB_id=231699 C1N79_RS29130 WP_019330179.1 6434750..6435430(+) (vraR) [Streptomyces sp. SGAir0924]
MTAIRLLLVDDDPLVRAGLSFMLGGADDVEIVGEAADGDEVAGLVDRTRPDVVLMDIRMPGVDGLTATERLRGRPDAPQV
IVLTTFHADEQVLRALRAGAAGFVLKDTPPAEILDAVRRVAAGDPVLSPAVTRRLMEHAAGGAADVRRARARARIETLNE
REREVAVAVGRGLANAAIAAELFMSVATVKTHVSRILAKLGLGNRVQIALLAYDAGLLDAYEEDGR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=231699 C1N79_RS29130 WP_019330179.1 6434750..6435430(+) (vraR) [Streptomyces sp. SGAir0924]
ATGACTGCCATCAGACTCCTCCTCGTCGACGACGACCCGTTGGTGCGGGCCGGGTTGTCCTTCATGCTCGGCGGGGCCGA
CGACGTCGAGATCGTGGGGGAGGCCGCCGACGGCGACGAGGTCGCCGGGCTCGTCGACCGCACCCGCCCGGACGTCGTCC
TCATGGACATCCGCATGCCGGGCGTGGACGGTCTGACGGCCACCGAGCGGCTGCGGGGCCGCCCGGACGCCCCGCAGGTC
ATCGTCCTCACCACCTTCCACGCCGACGAGCAGGTGCTGCGGGCGCTGCGCGCCGGCGCCGCCGGTTTCGTCCTGAAGGA
CACCCCGCCCGCGGAGATCCTCGACGCGGTGCGCAGGGTCGCGGCCGGGGACCCCGTCCTCTCGCCCGCGGTGACCCGGC
GGCTGATGGAGCACGCGGCCGGCGGCGCGGCCGACGTCCGGCGCGCCCGTGCGCGGGCCCGCATCGAGACCCTCAACGAA
CGCGAGCGCGAGGTCGCCGTCGCGGTCGGCCGGGGCCTGGCCAACGCCGCCATCGCGGCGGAACTCTTCATGAGCGTGGC
CACCGTCAAGACCCACGTCTCCCGCATCCTCGCCAAGCTCGGCCTCGGCAACCGGGTGCAGATCGCGCTGCTCGCGTACG
ACGCGGGGCTTCTGGACGCGTACGAGGAGGACGGACGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.443

96.903

0.363

Multiple sequence alignment