Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   CCD84_RS01910 Genome accession   NZ_CP021520
Coordinates   338591..339589 (-) Length   332 a.a.
NCBI ID   WP_149449329.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 11-7     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 333591..344589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD84_RS01890 (CCD84_01895) - 335073..335699 (-) 627 WP_002229201.1 phosphoribosylanthranilate isomerase -
  CCD84_RS01895 (CCD84_01900) greB 335758..336249 (-) 492 WP_002214159.1 transcription elongation factor GreB -
  CCD84_RS01900 (CCD84_01905) purF 336349..337893 (-) 1545 WP_002229203.1 amidophosphoribosyltransferase -
  CCD84_RS01905 (CCD84_01910) - 338101..338598 (-) 498 WP_002229197.1 CvpA family protein -
  CCD84_RS01910 (CCD84_01915) tpc 338591..339589 (-) 999 WP_149449329.1 cell division protein FtsN Machinery gene
  CCD84_RS01915 (CCD84_01920) folC 339602..340876 (-) 1275 WP_002229196.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  CCD84_RS01920 (CCD84_01925) - 340907..341353 (-) 447 WP_002229193.1 protein YgfX -
  CCD84_RS01925 (CCD84_01930) - 341358..341717 (-) 360 WP_002214147.1 hypothetical protein -
  CCD84_RS01930 (CCD84_01935) - 341790..342518 (-) 729 WP_118809328.1 amino acid ABC transporter ATP-binding protein -
  CCD84_RS01935 (CCD84_01940) rsmA 342691..343470 (-) 780 WP_002229195.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  CCD84_RS01945 (CCD84_01945) - 343667..344356 (+) 690 WP_002229198.1 uracil-DNA glycosylase family protein -

Sequence


Protein


Download         Length: 332 a.a.        Molecular weight: 35576.02 Da        Isoelectric Point: 10.2669

>NTDB_id=231671 CCD84_RS01910 WP_149449329.1 338591..339589(-) (tpc) [Neisseria meningitidis strain 11-7]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAKQTAGETSGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAESRKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAVGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=231671 CCD84_RS01910 WP_149449329.1 338591..339589(-) (tpc) [Neisseria meningitidis strain 11-7]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCAAACAGACTGCCGGCGAAA
CAAGCGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAGCGAAAAAAGCCGACAAGGCTGAAAGCAGAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAGGCGGTGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGTGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains


Predicted by InterproScan.

(259-330)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.306

100

0.931


Multiple sequence alignment