Detailed information NTG0231659

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C1N79_RS15785
• Genome accession: NZ_CP027297
• Coordinates: 3555061..3556059 (-)
• Length: 332 a.a.
• NCBI ID: WP_019326509.1
• Uniprot ID: A0ABW1XX86
• Organism: Streptomyces sp. SGAir0924
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3550061..3561059

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1N79_RS15765 (C1N79_15765)	-	3550191..3550952 (-)	762	WP_019326504.1	DeoR/GlpR family DNA-binding transcription regulator	-
C1N79_RS15770 (C1N79_15770)	-	3551271..3552791 (-)	1521	WP_046251791.1	MFS transporter	-
C1N79_RS15775 (C1N79_15775)	-	3552855..3553826 (+)	972	WP_046251790.1	YafY family protein	-
C1N79_RS15780 (C1N79_15780)	-	3553952..3554554 (-)	603	WP_225619885.1	TetR/AcrR family transcriptional regulator	-
C1N79_RS15785 (C1N79_15785)	rpoS	3555061..3556059 (-)	999	WP_019326509.1	RNA polymerase sigma factor RpoD/SigA	Regulator
C1N79_RS15790 (C1N79_15790)	-	3556267..3556782 (+)	516	WP_137962149.1	GNAT family N-acetyltransferase	-
C1N79_RS15795 (C1N79_15795)	-	3556805..3557566 (-)	762	WP_037907665.1	dioxygenase	-
C1N79_RS15800 (C1N79_15800)	-	3557683..3558198 (+)	516	WP_029393588.1	MarR family winged helix-turn-helix transcriptional regulator	-
C1N79_RS15805 (C1N79_15805)	-	3558314..3559858 (-)	1545	WP_046248980.1	MFS transporter	-
C1N79_RS15810 (C1N79_15810)	-	3559997..3560650 (-)	654	WP_175438013.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37212.91 Da
• Isoelectric Point: 4.8512

>NTDB_id=231659 C1N79_RS15785 WP_019326509.1 3555061..3556059(-) (rpoS) [Streptomyces sp. SGAir0924]
MATRAVARRKSATGETADAATSVRANGGELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGYEETGAD
ATREELQALIDEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDPRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide

• Length: 999 bp

>NTDB_id=231659 C1N79_RS15785 WP_019326509.1 3555061..3556059(-) (rpoS) [Streptomyces sp. SGAir0924]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACGGCCGACGCGGCAACCAGCGTCCGCGCCAACGG
CGGCGAGCTCGCCGACCGCGATCTGGTCGGCATGTACCTCGACGAGATCGCACGGACACCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGGCAGGTTCTCGAAGGCTACGAGGAGACCGGGGCGGAC
GCCACCCGGGAGGAGCTCCAGGCCCTGATCGACGAGGGCGAGCGCGCGAAGGACGTCTTCATCCGCTCGAACCTCCGCCT
GGTCGTCGCCGTGGCCCGCCGCTACCCCCGCAGCGGCCTGCCGCTCCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGG
TCCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCCACCTGGTGGATCCGTCAGGCCATC
ACCCGCTCCATCGCGGACCAGTCGCGCACCATCCGGCTCCCCGTCCACCTCGTGGAGGAACTGGGCCGCATCCGGCGCGT
GCAGCGCGAGTTCAACCGGGAGCACGGGCGCGAGCCGGAGCCCGCGGAGATCGCCGCCGAGCTGGGCTCGACGCCGGAGC
GCGTCACCGACGTGCTCGACTGGGCCCGCGACCCCGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCCGTGTCGCCCGAGCAGTCCGTGATGACGCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGCCGCCTCGACCCGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGGGAGCGTACGC
TGACCGAGGTCGGCAAGGAGCACGGGCTGACCCGTGAGCGCATCCGGCAGATCGAGAAGCACGCGCTGCTCGAGCTGAAG
AAGCTGGCCCGCGACACCGGCTTCGAGGCGGCGGCGTAG

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70, region 4 (Sigma70_r4) (269-321)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.06	0.364