Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   C6N18_RS02050 Genome accession   NZ_CP027246
Coordinates   240845..241480 (-) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii strain WCHAB005078     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 235845..246480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N18_RS02035 (C6N18_02035) - 236632..237816 (+) 1185 WP_000939109.1 S41 family peptidase -
  C6N18_RS02040 (C6N18_02040) - 237820..239241 (-) 1422 WP_000840548.1 sigma-54-dependent transcriptional regulator -
  C6N18_RS02045 (C6N18_02045) pilS 239266..240834 (-) 1569 WP_001160337.1 sensor histidine kinase Regulator
  C6N18_RS02050 (C6N18_02050) letA 240845..241480 (-) 636 WP_000633799.1 response regulator Regulator
  C6N18_RS02055 (C6N18_02055) pbpG 241693..242739 (+) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  C6N18_RS02060 (C6N18_02060) thrC 242848..243987 (-) 1140 WP_000063593.1 threonine synthase -
  C6N18_RS02065 (C6N18_02065) - 244043..245344 (-) 1302 WP_000805827.1 homoserine dehydrogenase -
  C6N18_RS02070 (C6N18_02070) - 245589..246404 (-) 816 WP_000011168.1 DsbC family protein -

Sequence


Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=231471 C6N18_RS02050 WP_000633799.1 240845..241480(-) (letA) [Acinetobacter baumannii strain WCHAB005078]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=231471 C6N18_RS02050 WP_000633799.1 240845..241480(-) (letA) [Acinetobacter baumannii strain WCHAB005078]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAACATGCCGGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTTGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCATTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGTGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55

  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55


Multiple sequence alignment