Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   S101441_RS06150 Genome accession   NZ_CP021507
Coordinates   1187286..1187864 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain SRCM101441     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1182286..1192864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101441_RS06130 (S101441_01231) hemAT 1182806..1184104 (-) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -
  S101441_RS06135 comW 1184243..1185771 (-) 1529 Protein_1134 FAD-dependent oxidoreductase -
  S101441_RS06140 (S101441_01235) yhxC 1185875..1186732 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  S101441_RS06145 (S101441_01236) yhzC 1186760..1186993 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  S101441_RS06150 (S101441_01237) comK 1187286..1187864 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  S101441_RS06155 (S101441_01238) yhxD 1187909..1188808 (-) 900 WP_069837408.1 SDR family oxidoreductase -
  S101441_RS06160 (S101441_01239) yhjA 1189025..1189294 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  S101441_RS06165 (S101441_01240) yhjB 1189338..1190807 (-) 1470 WP_014479374.1 sodium:solute symporter -
  S101441_RS06170 (S101441_01241) yhjC 1190804..1191004 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  S101441_RS06175 (S101441_01242) - 1191203..1191574 (-) 372 WP_014476361.1 hypothetical protein -
  S101441_RS06180 (S101441_01243) yhjE 1191726..1192349 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  S101441_RS06185 (S101441_01244) lepB 1192351..1192857 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=231451 S101441_RS06150 WP_003245329.1 1187286..1187864(+) (comK) [Bacillus subtilis subsp. subtilis strain SRCM101441]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=231451 S101441_RS06150 WP_003245329.1 1187286..1187864(+) (comK) [Bacillus subtilis subsp. subtilis strain SRCM101441]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment