Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BJE04_RS13285 Genome accession   NC_005139
Coordinates   2846033..2846551 (-) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus YJ016     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2841033..2851551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS13260 (VV2787) rimM 2841115..2841663 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  BJE04_RS13265 (VV2788) rpsP 2841679..2841927 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  BJE04_RS13270 (VV2789) ffh 2842195..2843571 (-) 1377 WP_011079540.1 signal recognition particle protein -
  BJE04_RS13275 (VV2790) - 2843785..2844579 (+) 795 WP_011079539.1 cytochrome C assembly family protein -
  BJE04_RS13280 (VV2791) - 2844666..2845943 (+) 1278 WP_011079538.1 HlyC/CorC family transporter -
  BJE04_RS13285 (VV2792) luxS 2846033..2846551 (-) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  BJE04_RS13290 (VV2793) - 2846602..2847207 (-) 606 WP_223370886.1 hypothetical protein -
  BJE04_RS13295 (VV2794) gshA 2847245..2848810 (-) 1566 WP_043877314.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=23143 BJE04_RS13285 WP_011079537.1 2846033..2846551(-) (luxS) [Vibrio vulnificus YJ016]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=23143 BJE04_RS13285 WP_011079537.1 2846033..2846551(-) (luxS) [Vibrio vulnificus YJ016]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACGTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCATCGGTTGAGATCATCGATATCTCACCG
ATGGGTTGTCGCACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCGCAGAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAACGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment