Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   S101267_RS18350 Genome accession   NZ_CP021505
Coordinates   3513676..3514839 (-) Length   387 a.a.
NCBI ID   WP_013353787.1    Uniprot ID   A0A9P1JKJ4
Organism   Bacillus amyloliquefaciens strain SRCM101267     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3508676..3519839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101267_RS18320 (S101267_03683) - 3508942..3509361 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  S101267_RS18325 (S101267_03684) comFC 3509435..3510124 (-) 690 WP_198315882.1 ComF family protein Machinery gene
  S101267_RS18330 (S101267_03685) - 3510130..3510414 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  S101267_RS18335 (S101267_03686) comFA 3510473..3511858 (-) 1386 WP_013353785.1 DEAD/DEAH box helicase Machinery gene
  S101267_RS18340 (S101267_03687) - 3511965..3512813 (-) 849 WP_013353786.1 DegV family protein -
  S101267_RS18345 (S101267_03688) degU 3512910..3513599 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  S101267_RS18350 (S101267_03689) degS 3513676..3514839 (-) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  S101267_RS18355 (S101267_03690) - 3515062..3515709 (+) 648 WP_013353788.1 YigZ family protein -
  S101267_RS18360 (S101267_03691) - 3515714..3516988 (+) 1275 WP_013353789.1 LCP family protein -
  S101267_RS18365 (S101267_03692) - 3517088..3518164 (-) 1077 WP_013353790.1 glycosyltransferase family 4 protein -
  S101267_RS18370 (S101267_03693) tuaH 3518297..3519493 (-) 1197 WP_013353791.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45028.85 Da        Isoelectric Point: 7.1379

>NTDB_id=231426 S101267_RS18350 WP_013353787.1 3513676..3514839(-) (degS) [Bacillus amyloliquefaciens strain SRCM101267]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKEAKQKKNKSFGLLGMKERVDLLEGTITIDSKLGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=231426 S101267_RS18350 WP_013353787.1 3513676..3514839(-) (degS) [Bacillus amyloliquefaciens strain SRCM101267]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTCGAAGTACATACCCGGCATGCAAGAAACCGCTTGTCGGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTGCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATCGAAGCCCAGGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCGGCTCAAATGCTGGCAAATGTTATGATGAGATCGGAATTGATAGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGCTTTCAGGAAATCAGAAATCTTCGCCAGAATGTGCGGAATGCTCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCGCTGAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACTGCTGATTTTGTGGTTCTTATTATTAAGGACAACGGAAAAGGCTTTGATATCAAGGAAGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTCGAAGGAACGATAACGATAGACTCTAAACTAGGTCTTG
GGACATTTATCATGATTAAGGTTCCTTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.325

99.483

0.948

Multiple sequence alignment