Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   S101267_RS12990 Genome accession   NZ_CP021505
Coordinates   2508365..2509132 (-) Length   255 a.a.
NCBI ID   WP_013352918.1    Uniprot ID   A0A9P1NI13
Organism   Bacillus amyloliquefaciens strain SRCM101267     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2503365..2514132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101267_RS12970 (S101267_02603) - 2503567..2504379 (-) 813 WP_013352914.1 pyruvate, water dikinase regulatory protein -
  S101267_RS12975 (S101267_02604) ccpN 2504405..2505043 (-) 639 WP_014470676.1 transcriptional regulator CcpN -
  S101267_RS12980 (S101267_02605) glyS 2505144..2507183 (-) 2040 WP_014470677.1 glycine--tRNA ligase subunit beta -
  S101267_RS12985 (S101267_02606) glyQ 2507176..2508063 (-) 888 WP_013352917.1 glycine--tRNA ligase subunit alpha -
  S101267_RS12990 (S101267_02607) recO 2508365..2509132 (-) 768 WP_013352918.1 DNA repair protein RecO Machinery gene
  S101267_RS12995 (S101267_02608) - 2509169..2509312 (-) 144 WP_007408286.1 YqzL family protein -
  S101267_RS13000 (S101267_02609) era 2509467..2510372 (-) 906 WP_013352919.1 GTPase Era -
  S101267_RS13005 (S101267_02610) - 2510353..2510763 (-) 411 WP_013352920.1 cytidine deaminase -
  S101267_RS13010 (S101267_02611) - 2510886..2511260 (-) 375 WP_014470681.1 diacylglycerol kinase family protein -
  S101267_RS13015 (S101267_02612) ybeY 2511241..2511714 (-) 474 WP_013352922.1 rRNA maturation RNase YbeY -
  S101267_RS13020 (S101267_02613) - 2511715..2513847 (-) 2133 WP_013352923.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29331.07 Da        Isoelectric Point: 9.0137

>NTDB_id=231406 S101267_RS12990 WP_013352918.1 2508365..2509132(-) (recO) [Bacillus amyloliquefaciens strain SRCM101267]
MLTKCEGIVLRTNDYGEMNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSRDG
TFHFSVRDNGFICHRCFGKDPYKVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKHLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=231406 S101267_RS12990 WP_013352918.1 2508365..2509132(-) (recO) [Bacillus amyloliquefaciens strain SRCM101267]
ATGCTGACAAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGAGAGATGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTTATGGCAAGAGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGACTTGTTTTTGACGGCATATGCCGCTTTTATCGCTGAACTTACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAAGGGACTGACCCGGACGTGATCACCTTCA
TCGTTCAGATGAAAATGCTCGGCGTCATGGGACTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCCGGGACGGG
ACGTTTCATTTTTCGGTAAGAGATAATGGTTTTATCTGCCACCGCTGCTTTGGAAAGGATCCGTACAAAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCATTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTTATCGATCTGTATTATGAGGAATATTCAGGGCTTTATTTAAAGTCTAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGCACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.804

100

0.898

Multiple sequence alignment