Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C_RS06015 Genome accession   NC_004431
Coordinates   1233881..1234357 (+) Length   158 a.a.
NCBI ID   WP_001186170.1    Uniprot ID   A0A0H2V684
Organism   Escherichia coli CFT073     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1228881..1239357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C_RS05995 (c1275) - 1231442..1231897 (+) 456 WP_000581502.1 IrmA family protein -
  C_RS30100 - 1232040..1232129 (+) 90 WP_230607454.1 DUF905 family protein -
  C_RS06005 (c1278) - 1232308..1233129 (+) 822 WP_001234710.1 DUF932 domain-containing protein -
  C_RS06010 (c1280) - 1233392..1233865 (+) 474 WP_000855076.1 antirestriction protein -
  C_RS06015 (c1282) radC 1233881..1234357 (+) 477 WP_001186170.1 JAB domain-containing protein Machinery gene
  C_RS06020 istA 1234499..1235998 (+) 1500 WP_000174402.1 IS21-like element ISEc10 family transposase -
  C_RS06025 istB 1235995..1236750 (+) 756 WP_000065240.1 IS21-like element ISEc10 family helper ATPase IstB -
  C_RS06030 (c1284) - 1236836..1237057 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  C_RS06035 (c1285) - 1237076..1237720 (+) 645 WP_000094915.1 hypothetical protein -
  C_RS29770 - 1237770..1238144 (+) 375 Protein_1158 type IV toxin-antitoxin system YeeU family antitoxin -
  C_RS06050 (c1288) - 1238191..1238571 (+) 381 WP_000854739.1 TA system toxin CbtA family protein -
  C_RS06055 (c1289) - 1238568..1239056 (+) 489 WP_001054232.1 DUF5983 family protein -
  C_RS06060 (c1290) - 1239076..1239273 (+) 198 WP_000772027.1 DUF957 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.30 Da        Isoelectric Point: 7.2020

>NTDB_id=23134 C_RS06015 WP_001186170.1 1233881..1234357(+) (radC) [Escherichia coli CFT073]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=23134 C_RS06015 WP_001186170.1 1233881..1234357(+) (radC) [Escherichia coli CFT073]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2V684

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment