Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BJE04_RS07325 Genome accession   NC_005139
Coordinates   1508555..1509976 (-) Length   473 a.a.
NCBI ID   WP_011150112.1    Uniprot ID   A0AAN1UC63
Organism   Vibrio vulnificus YJ016     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1503555..1514976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS07295 (VV1466) - 1503963..1504730 (+) 768 WP_011080632.1 phospholipase A -
  BJE04_RS07300 (VV1467) - 1504969..1505373 (+) 405 WP_011080631.1 hypothetical protein -
  BJE04_RS07305 (VV1468) - 1505447..1506550 (-) 1104 WP_011080630.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  BJE04_RS07310 (VV1469) - 1506753..1507145 (-) 393 WP_011150110.1 SulA-like leucine-rich domain-containing protein -
  BJE04_RS07315 (VV1470) - 1507458..1508135 (-) 678 WP_011080628.1 LrgB family protein -
  BJE04_RS07320 (VV1471) - 1508138..1508509 (-) 372 WP_043877143.1 CidA/LrgA family protein -
  BJE04_RS07325 (VV1472) sbcB 1508555..1509976 (-) 1422 WP_011150112.1 exodeoxyribonuclease I Machinery gene
  BJE04_RS07330 (VV1473) - 1510050..1510748 (-) 699 WP_011150113.1 oxidoreductase -
  BJE04_RS07335 (VV1474) cobT 1511285..1512313 (+) 1029 WP_011150114.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  BJE04_RS07340 (VV1475) - 1512315..1513082 (+) 768 WP_011080623.1 adenosylcobinamide-GDP ribazoletransferase -
  BJE04_RS07345 (VV1476) cobU 1513085..1513645 (+) 561 WP_043877144.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  BJE04_RS07350 (VV1477) cobC 1513655..1514293 (+) 639 WP_011150116.1 alpha-ribazole phosphatase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54741.99 Da        Isoelectric Point: 5.1722

>NTDB_id=23134 BJE04_RS07325 WP_011150112.1 1508555..1509976(-) (sbcB) [Vibrio vulnificus YJ016]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=23134 BJE04_RS07325 WP_011150112.1 1508555..1509976(-) (sbcB) [Vibrio vulnificus YJ016]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCACAAAAAGCGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCAAAAATCCACGCAGAGTTGTCGCGTCCGAACACCACTAGCCTCGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACTCGTTACACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATAGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTCGGCGATTTATTGCCTG
TGCCAGTTAAACTGGTGCATTTGAATAAGTGCCCAATTTTAGCACCAGCCAAAACCCTCACTGCGGAGAATGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCACCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAGCCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.72

99.789

0.805

Multiple sequence alignment