Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C6H73_RS08980 Genome accession   NZ_CP027219
Coordinates   1712301..1713728 (-) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain 2015C-3163     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1707301..1718728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H73_RS08950 yeeZ 1707356..1708180 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  C6H73_RS08955 yeeY 1708226..1709155 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  C6H73_RS08960 yoeI 1709370..1709432 (+) 63 WP_010723108.1 membrane protein YoeI -
  C6H73_RS08965 plaP 1709422..1710780 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C6H73_RS08970 tsuA 1710959..1712017 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  C6H73_RS08975 tsuB 1712031..1712258 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C6H73_RS08980 sbcB 1712301..1713728 (-) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  C6H73_RS08985 dacD 1713937..1715103 (+) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C6H73_RS08990 sbmC 1715222..1715695 (+) 474 WP_001105383.1 DNA gyrase inhibitor SbmC -
  C6H73_RS08995 yeeA 1715893..1716951 (+) 1059 WP_001200891.1 FUSC family protein -
  C6H73_RS09000 tmaR 1717123..1717452 (+) 330 WP_000450409.1 DUF496 family protein -
  C6H73_RS31355 - 1717553..1717735 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  C6H73_RS30935 - 1717855..1717935 (+) 81 WP_023441679.1 hypothetical protein -
  C6H73_RS30590 - 1718224..1718304 (-) 81 Protein_1658 hypothetical protein -
  C6H73_RS09020 yeeW 1718350..1718544 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=231333 C6H73_RS08980 WP_000980608.1 1712301..1713728(-) (sbcB) [Escherichia coli strain 2015C-3163]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=231333 C6H73_RS08980 WP_000980608.1 1712301..1713728(-) (sbcB) [Escherichia coli strain 2015C-3163]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581