Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   S101359_RS12870 Genome accession   NZ_CP021500
Coordinates   2612084..2612851 (-) Length   255 a.a.
NCBI ID   WP_088117596.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2607084..2617851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS12850 (S101359_02537) - 2607242..2608054 (-) 813 WP_004429498.1 pyruvate, water dikinase regulatory protein -
  S101359_RS12855 (S101359_02538) ccpN 2608080..2608718 (-) 639 WP_034718267.1 transcriptional regulator CcpN -
  S101359_RS12860 (S101359_02539) glyS 2608866..2610905 (-) 2040 WP_088117595.1 glycine--tRNA ligase subunit beta -
  S101359_RS12865 (S101359_02540) glyQ 2610898..2611785 (-) 888 WP_004429491.1 glycine--tRNA ligase subunit alpha -
  S101359_RS12870 (S101359_02541) recO 2612084..2612851 (-) 768 WP_088117596.1 DNA repair protein RecO Machinery gene
  S101359_RS12875 (S101359_02542) - 2612888..2613031 (-) 144 WP_004429487.1 YqzL family protein -
  S101359_RS12880 (S101359_02543) era 2613188..2614093 (-) 906 WP_004429485.1 GTPase Era -
  S101359_RS12885 (S101359_02544) - 2614074..2614484 (-) 411 WP_010789236.1 cytidine deaminase -
  S101359_RS12890 (S101359_02545) - 2614598..2614975 (-) 378 WP_004429481.1 diacylglycerol kinase family protein -
  S101359_RS12895 (S101359_02546) ybeY 2614956..2615429 (-) 474 WP_010789237.1 rRNA maturation RNase YbeY -
  S101359_RS12900 (S101359_02547) - 2615430..2617565 (-) 2136 WP_010789238.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29184.86 Da        Isoelectric Point: 8.5598

>NTDB_id=231302 S101359_RS12870 WP_088117596.1 2612084..2612851(-) (recO) [Bacillus atrophaeus strain SRCM101359]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFELILESLKRLNEGTDPDVITFIVQMKMLGVIGLYPELNHCVHCQSQDG
TFHFSVRDNGFICHRCFGKDPYKVPITPQTARLLRLFYYFDLSRLGNVSIKQETKDELKRVIDLYYEEYSGIYLKSKRFL
DQMESMKNLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=231302 S101359_RS12870 WP_088117596.1 2612084..2612851(-) (recO) [Bacillus atrophaeus strain SRCM101359]
ATGCTGACAAAATGTGAAGGAATTGTCCTTCGTACCAATGACTACGGCGAAACAAATAAGATTGTGACCCTGCTGACAAG
GGAGCACGGCAAAATCGGCGTAATGGCAAGAGGCGCCAAAAAAACCAACAGCCGTTTATCAGCCGTCAGCCAGCCTTTTC
TGTATGGATCGTTTTTAATGCAAAAAACGTCAGGTCTCGGGACGCTTCAGCAGGGTGAAATGATTCTCAGTATGAGAGGC
ATCAGAGAAGATTTGTTTTTGACAGCTTATGCTGCTTTTATTGCAGAACTTGTTGATAAGGGGACGGAGGAAAAGAAGCC
GAACCCGTATTTGTTTGAATTGATTCTTGAGTCTTTGAAGAGGCTTAATGAAGGAACCGACCCCGATGTCATTACCTTCA
TCGTTCAAATGAAAATGCTGGGTGTAATAGGTTTGTATCCTGAACTCAACCACTGTGTGCATTGTCAAAGTCAGGATGGA
ACGTTTCATTTTTCTGTCAGGGATAACGGATTTATCTGTCATCGCTGCTTTGGCAAGGACCCTTACAAAGTGCCGATTAC
GCCGCAAACGGCCAGGCTTTTGAGACTGTTTTATTACTTTGATCTTTCTAGACTCGGCAATGTATCCATAAAGCAGGAAA
CAAAGGATGAGCTAAAACGGGTCATTGACTTGTATTACGAAGAATATTCCGGAATTTATCTTAAATCAAAACGTTTTTTA
GACCAAATGGAGAGTATGAAAAATCTAATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

92.941

100

0.929

Multiple sequence alignment