Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   S101359_RS11285 Genome accession   NZ_CP021500
Coordinates   2330101..2330709 (+) Length   202 a.a.
NCBI ID   WP_010789030.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2325101..2335709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS11245 (S101359_02217) - 2326207..2326713 (-) 507 WP_003325657.1 PTS glucose transporter subunit IIA -
  S101359_RS11250 (S101359_02218) - 2326863..2327282 (+) 420 WP_088117448.1 Hsp20/alpha crystallin family protein -
  S101359_RS11255 (S101359_02219) - 2327302..2327691 (-) 390 WP_088117449.1 YppG family protein -
  S101359_RS11260 (S101359_02220) - 2327881..2328069 (+) 189 WP_035175493.1 YppF family protein -
  S101359_RS11265 (S101359_02221) - 2328103..2328438 (-) 336 WP_088118493.1 YppE family protein -
  S101359_RS11270 (S101359_02222) - 2328519..2328764 (-) 246 WP_061670114.1 DUF5446 family protein -
  S101359_RS11275 (S101359_02223) sspM 2328965..2329069 (+) 105 WP_003325650.1 acid-soluble spore protein SspM -
  S101359_RS11280 (S101359_02224) - 2329096..2330058 (-) 963 WP_088117450.1 DUF2515 domain-containing protein -
  S101359_RS11285 (S101359_02225) recU 2330101..2330709 (+) 609 WP_010789030.1 Holliday junction resolvase RecU Machinery gene
  S101359_RS11290 (S101359_02226) - 2330747..2333500 (+) 2754 WP_088117451.1 PBP1A family penicillin-binding protein -
  S101359_RS11295 (S101359_02227) - 2333592..2334083 (-) 492 WP_088117452.1 YpoC family protein -
  S101359_RS11300 (S101359_02228) nth 2334080..2334739 (-) 660 WP_003325645.1 endonuclease III -
  S101359_RS11305 (S101359_02229) dnaD 2334758..2335456 (-) 699 WP_088117453.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23625.92 Da        Isoelectric Point: 9.8392

>NTDB_id=231291 S101359_RS11285 WP_010789030.1 2330101..2330709(+) (recU) [Bacillus atrophaeus strain SRCM101359]
MIRYPNGKTFQPKKTVSSQNRQKKPLSYSNRGMTLEDDLNETNKYYLAKQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGLYKGRYIDFEAKETKNTTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEAEKLFYFWERKE
KNGRKSIRKDELNEAAFPISLGYSPRIDYISIIEQLYFSPNP

Nucleotide


Download         Length: 609 bp        

>NTDB_id=231291 S101359_RS11285 WP_010789030.1 2330101..2330709(+) (recU) [Bacillus atrophaeus strain SRCM101359]
GTGATTCGGTATCCCAACGGAAAAACGTTTCAGCCGAAAAAAACGGTTTCATCCCAAAATAGGCAAAAAAAGCCGCTATC
ATACAGTAATCGCGGCATGACCCTCGAAGATGACTTAAATGAAACGAATAAGTATTATCTAGCAAAGCAAATTGCCGTGA
TTCACAAAAAACCGACGCCCGTGCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCAGCTGTCATCAAAGAAGCCTAT
TTTAAGCAGTCATCAACAACTGACTATAATGGACTTTACAAAGGCCGGTATATTGATTTTGAAGCAAAGGAAACGAAAAA
TACAACCTCCTTCCCTTTGCAAAACTTTCATGATCACCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGAATTT
GTTTTGTTATTATATCCGCTTTCGGCCAAGTTTATTTTTTAGAGGCTGAAAAGCTGTTTTACTTCTGGGAAAGAAAAGAA
AAGAACGGCAGAAAGTCGATTCGGAAAGACGAATTAAATGAAGCCGCTTTTCCAATTTCACTTGGATACTCGCCAAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCAAACCCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.547

99.505

0.901

Multiple sequence alignment