Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   S101359_RS07735 Genome accession   NZ_CP021500
Coordinates   1544936..1545214 (+) Length   92 a.a.
NCBI ID   WP_003329146.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539936..1550214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS07715 (S101359_01521) - 1541131..1542045 (+) 915 WP_088117092.1 ketopantoate reductase family protein -
  S101359_RS07720 (S101359_01522) - 1542076..1543308 (-) 1233 WP_010788481.1 aminopeptidase -
  S101359_RS07725 (S101359_01523) - 1543410..1543544 (-) 135 WP_010788482.1 protein YkpC -
  S101359_RS07730 (S101359_01524) mreBH 1543646..1544653 (-) 1008 WP_035175453.1 cell shape-determining protein MreBH -
  S101359_RS07735 (S101359_01525) abrB 1544936..1545214 (+) 279 WP_003329146.1 transcriptional regulator AbhA Regulator
  S101359_RS07740 (S101359_01527) - 1545427..1546713 (+) 1287 Protein_1473 ATP-binding protein -
  S101359_RS07745 (S101359_01528) - 1546726..1547565 (+) 840 WP_088117093.1 gamma-glutamylcyclotransferase -
  S101359_RS07750 (S101359_01529) ktrC 1547615..1548280 (+) 666 WP_010788485.1 Ktr system potassium transporter KtrC -
  S101359_RS07755 (S101359_01530) ade 1548450..1550177 (+) 1728 WP_010788486.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10211.03 Da        Isoelectric Point: 6.9804

>NTDB_id=231286 S101359_RS07735 WP_003329146.1 1544936..1545214(+) (abrB) [Bacillus atrophaeus strain SRCM101359]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGVCLMTGEITTENKEYGNGKIILSPEGAQ
QLLDEIQAALKA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=231286 S101359_RS07735 WP_003329146.1 1544936..1545214(+) (abrB) [Bacillus atrophaeus strain SRCM101359]
ATGAAATCAATTGGTGTTGTAAGAAAAGTAGATGAACTTGGCCGTATTGTTATGCCGATAGAATTAAGAAGAGCGTTAGA
TATTGCGATTAAAGACAGTATTGAGTTCTTTGTAGACGGAGATAAAATCGTCTTGAAAAAATATAAGCCGCACGGCGTGT
GTTTAATGACAGGGGAAATTACGACAGAAAATAAAGAATACGGAAATGGAAAAATCATTTTAAGTCCAGAAGGCGCACAG
CAGCTGCTTGACGAAATACAAGCTGCTTTAAAAGCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment