Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   S101359_RS07510 Genome accession   NZ_CP021500
Coordinates   1503260..1503724 (-) Length   154 a.a.
NCBI ID   WP_003327274.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1498260..1508724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS07490 (S101359_01476) - 1498707..1500527 (+) 1821 WP_088117073.1 PAS domain-containing protein -
  S101359_RS07495 (S101359_01477) - 1500550..1501719 (-) 1170 WP_088117074.1 aminotransferase A -
  S101359_RS21180 (S101359_01478) - 1501925..1502086 (-) 162 WP_003327276.1 hypothetical protein -
  S101359_RS07505 (S101359_01479) cheV 1502295..1503206 (+) 912 WP_003327275.1 chemotaxis protein CheV -
  S101359_RS07510 (S101359_01480) kre 1503260..1503724 (-) 465 WP_003327274.1 YkyB family protein Regulator
  S101359_RS07515 (S101359_01481) - 1503847..1505142 (-) 1296 WP_088117075.1 MFS transporter -
  S101359_RS07520 (S101359_01482) - 1505218..1505715 (-) 498 WP_087941879.1 L,D-transpeptidase family protein -
  S101359_RS07525 (S101359_01483) - 1505851..1506711 (-) 861 WP_088117076.1 metallophosphoesterase -
  S101359_RS07530 (S101359_01484) fadH 1506858..1507622 (+) 765 WP_088117077.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17942.68 Da        Isoelectric Point: 10.4207

>NTDB_id=231284 S101359_RS07510 WP_003327274.1 1503260..1503724(-) (kre) [Bacillus atrophaeus strain SRCM101359]
MDDHAYTKDLRPTIENLSKAVYTVNRHAKTAPNPKYLYTLKKRALQKLVKEGKGKKVGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKNLLQDYVGMKEKPFVTNRQQPTYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=231284 S101359_RS07510 WP_003327274.1 1503260..1503724(-) (kre) [Bacillus atrophaeus strain SRCM101359]
ATGGACGACCATGCATATACGAAAGATCTGCGGCCAACCATCGAAAATCTTTCAAAAGCTGTCTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATACTTTGAAAAAACGGGCTTTACAAAAGCTGGTGAAAGAAGGTAAAG
GAAAGAAAGTAGGGCTTCATTTTTCAAAAAATCCAAGGTTTAGCCAACAGCAATCGGACGTGCTCATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCGAACACCTTCCGCATTTAGGTACGCTAAATCAATCGTACCGGAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAAAACCTTTTGCAAGATTATGTCGGCATGAAAGAAAAACCGTTTGTCA
CAAATCGGCAGCAGCCAACTTACCATAAACCTGTTTTCAAAAAGCTTGGAGAAAGTTACTTTTGA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

94.156

100

0.942

Multiple sequence alignment