Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   S101359_RS06445 Genome accession   NZ_CP021500
Coordinates   1309797..1310222 (+) Length   141 a.a.
NCBI ID   WP_088118464.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1304797..1315222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS06400 - 1305073..1305159 (-) 87 WP_073991391.1 YjcZ family sporulation protein -
  S101359_RS06405 - 1305376..1305491 (+) 116 Protein_1206 peptidoglycan-binding domain-containing protein -
  S101359_RS21150 - 1306190..1306474 (-) 285 Protein_1207 contact-dependent growth inhibition system immunity protein -
  S101359_RS06415 (S101359_01268) - 1306491..1306811 (+) 321 WP_088118463.1 putative quinol monooxygenase -
  S101359_RS06425 (S101359_01269) - 1307988..1308269 (-) 282 WP_061571258.1 hypothetical protein -
  S101359_RS21470 (S101359_01270) - 1308663..1308819 (+) 157 Protein_1210 hypothetical protein -
  S101359_RS06435 (S101359_01271) - 1308938..1309267 (-) 330 WP_010788288.1 hypothetical protein -
  S101359_RS06440 (S101359_01272) - 1309327..1309605 (-) 279 WP_003327515.1 hypothetical protein -
  S101359_RS06445 (S101359_01273) nucA/comI 1309797..1310222 (+) 426 WP_088118464.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  S101359_RS06450 (S101359_01274) - 1310371..1311033 (+) 663 WP_003327513.1 MgtC/SapB family protein -
  S101359_RS06455 (S101359_01275) - 1311092..1311331 (-) 240 WP_003327512.1 hypothetical protein -
  S101359_RS06460 - 1311544..1311756 (-) 213 WP_003327511.1 aspartyl-phosphate phosphatase Spo0E family protein -
  S101359_RS06465 (S101359_01276) - 1311816..1312031 (-) 216 WP_081112782.1 spore coat protein -
  S101359_RS06470 (S101359_01277) - 1312346..1313746 (+) 1401 WP_088116953.1 polysaccharide deacetylase family protein -
  S101359_RS06475 (S101359_01278) - 1313799..1314272 (-) 474 WP_088118466.1 YjfA family protein -
  S101359_RS06480 (S101359_01279) - 1314408..1314811 (-) 404 Protein_1220 DUF2809 domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15428.30 Da        Isoelectric Point: 4.7462

>NTDB_id=231280 S101359_RS06445 WP_088118464.1 1309797..1310222(+) (nucA/comI) [Bacillus atrophaeus strain SRCM101359]
MKKWITSLFLTAAILFGLMGAEVYAPQDVKGASRYDQVLYFPFSRYPETGDHIKDAIAAGHSDVCTIDRAGADERREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADIRYVAPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=231280 S101359_RS06445 WP_088118464.1 1309797..1310222(+) (nucA/comI) [Bacillus atrophaeus strain SRCM101359]
ATGAAAAAATGGATCACGAGCTTATTTCTGACCGCAGCGATATTGTTTGGATTGATGGGTGCGGAAGTGTATGCTCCGCA
GGATGTCAAAGGCGCATCACGGTATGATCAGGTCCTTTACTTCCCATTTTCACGTTATCCTGAAACCGGCGATCACATTA
AAGATGCGATAGCGGCCGGGCATTCAGATGTATGTACGATTGACAGGGCCGGGGCGGATGAGCGCAGGGAGGAGTCTTTA
AAGGGGATTCCTACAAAACCGGGGTATGACCGGGATGAGTGGCCGATGGCTGTATGTGAAGAAGGCGGGGCTGGGGCGGA
TATCCGGTATGTCGCCCCATCTGATAATCGAGGCGCCGGTTCATGGGTCGGGAATCAAATGAGCGGTTATTCTGATGGTA
CGAGAGTATTATTTATCGTACAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.524

89.362

0.532

Multiple sequence alignment