Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C_RS02720 Genome accession   NC_004431
Coordinates   569055..569660 (+) Length   201 a.a.
NCBI ID   WP_001195028.1    Uniprot ID   P0A7H7
Organism   Escherichia coli CFT073     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 564055..574660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C_RS30495 - 564609..564707 (+) 99 Protein_516 hypothetical protein -
  C_RS02690 (c0585) rsmS 564760..564921 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  C_RS02695 (c0586) priC 564935..565462 (-) 528 WP_000858961.1 primosomal replication protein N'' -
  C_RS02700 (c0587) ybaN 565532..565909 (+) 378 WP_001188900.1 DUF454 family protein -
  C_RS02705 (c0588) apt 566062..566613 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  C_RS02710 (c0589) dnaX 566742..568673 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  C_RS02715 (c0591) ybaB 568726..569055 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  C_RS02720 (c0592) recR 569055..569660 (+) 606 WP_001195028.1 recombination mediator RecR Machinery gene
  C_RS02725 (c0593) htpG 569770..571644 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  C_RS02730 (c0594) adk 571825..572469 (+) 645 WP_001313630.1 adenylate kinase -
  C_RS02735 (c0595) hemH 572601..573563 (+) 963 WP_001250114.1 ferrochelatase -
  C_RS02740 (c0596) aes 573560..574519 (-) 960 WP_000801819.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21968.73 Da        Isoelectric Point: 4.9097

>NTDB_id=23126 C_RS02720 WP_001195028.1 569055..569660(+) (recR) [Escherichia coli CFT073]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADXYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=23126 C_RS02720 WP_001195028.1 569055..569660(+) (recR) [Escherichia coli CFT073]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACWTTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment