Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | S101359_RS00245 | Genome accession | NZ_CP021500 |
| Coordinates | 44538..44828 (-) | Length | 96 a.a. |
| NCBI ID | WP_088116342.1 | Uniprot ID | - |
| Organism | Bacillus atrophaeus strain SRCM101359 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 39538..49828
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| S101359_RS00205 (S101359_00040) | darA | 39556..39885 (+) | 330 | WP_003328606.1 | cyclic di-AMP receptor DarA | - |
| S101359_RS00210 (S101359_00041) | - | 39898..40338 (+) | 441 | WP_088116341.1 | DUF327 family protein | - |
| S101359_RS00215 (S101359_00042) | holB | 40350..41339 (+) | 990 | WP_010787388.1 | DNA polymerase III subunit delta' | - |
| S101359_RS00220 (S101359_00043) | ricT | 41342..42169 (+) | 828 | WP_061571110.1 | competence/sporulation regulator complex protein RicT | - |
| S101359_RS00225 (S101359_00044) | yabA | 42184..42543 (+) | 360 | WP_003328601.1 | replication initiation-control protein YabA | - |
| S101359_RS00230 (S101359_00045) | - | 42604..43347 (+) | 744 | WP_003328600.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| S101359_RS00235 (S101359_00046) | - | 43334..43633 (+) | 300 | WP_003328599.1 | GIY-YIG nuclease family protein | - |
| S101359_RS00240 (S101359_00047) | rsmI | 43608..44486 (+) | 879 | WP_010787389.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| S101359_RS00245 (S101359_00048) | abrB | 44538..44828 (-) | 291 | WP_088116342.1 | transition state genes transcriptional regulator AbrB | Regulator |
| S101359_RS00250 (S101359_00049) | metG | 45315..47309 (+) | 1995 | WP_003328595.1 | methionine--tRNA ligase | - |
| S101359_RS00255 (S101359_00050) | - | 47388..48155 (+) | 768 | WP_088116343.1 | TatD family hydrolase | - |
| S101359_RS00260 (S101359_00051) | - | 48313..49638 (+) | 1326 | WP_088116344.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10858.67 Da Isoelectric Point: 6.3482
>NTDB_id=231256 S101359_RS00245 WP_088116342.1 44538..44828(-) (abrB) [Bacillus atrophaeus strain SRCM101359]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSQEG
AEQIIKEIQNQLQSQK
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSQEG
AEQIIKEIQNQLQSQK
Nucleotide
Download Length: 291 bp
>NTDB_id=231256 S101359_RS00245 WP_088116342.1 44538..44828(-) (abrB) [Bacillus atrophaeus strain SRCM101359]
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAAACGGTAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAAACGGTAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
94.792 |
100 |
0.948 |