Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   S101359_RS00020 Genome accession   NZ_CP021500
Coordinates   3026..4138 (+) Length   370 a.a.
NCBI ID   WP_061571949.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS00005 (S101359_00001) dnaA 1..1341 (+) 1341 WP_003326038.1 chromosomal replication initiator protein DnaA -
  S101359_RS00010 (S101359_00002) dnaN 1523..2659 (+) 1137 WP_010790563.1 DNA polymerase III subunit beta -
  S101359_RS00015 (S101359_00003) rlbA 2795..3010 (+) 216 WP_088116329.1 ribosome maturation protein RlbA -
  S101359_RS00020 (S101359_00004) recF 3026..4138 (+) 1113 WP_061571949.1 DNA replication/repair protein RecF Machinery gene
  S101359_RS00025 (S101359_00005) - 4156..4401 (+) 246 WP_003326032.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  S101359_RS00030 (S101359_00006) gyrB 4458..6374 (+) 1917 WP_061571948.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  S101359_RS00035 (S101359_00007) gyrA 6601..9066 (+) 2466 WP_010790566.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42462.54 Da        Isoelectric Point: 8.2836

>NTDB_id=231254 S101359_RS00020 WP_061571949.1 3026..4138(+) (recF) [Bacillus atrophaeus strain SRCM101359]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGP
IPMQLVISKKGKKGKVNHIEQQKLSRYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILTQR
NHFLKQLQSRKQTDRTMLDVLTEQLIEAAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYQTALEVSDPEDLSKI
GDSYQRAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=231254 S101359_RS00020 WP_061571949.1 3026..4138(+) (recF) [Bacillus atrophaeus strain SRCM101359]
TTGTATATCCAAAATTTGGAATTAACGTCTTATCGTAATTACGAGCGTGCTGAACTACAATTCGAAAATAAAGTGAATGT
CATCATCGGTGAGAACGCTCAAGGGAAGACAAATCTCATGGAAGCGATCTATGTTTTGTCGATGGCGAAATCACATCGCA
CGTCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCAAAACGGGCCG
ATCCCAATGCAGCTTGTCATTTCCAAGAAGGGGAAAAAGGGCAAGGTCAATCATATCGAACAGCAAAAACTGAGCCGGTA
TGTAGGAGCGCTGAATACAATTATGTTCGCGCCCGAGGACTTAAATCTCGTAAAGGGCAGCCCGCAAGTAAGACGGCGGT
TTCTTGACATGGAAATCGGCCAGGTATCTCCAGTCTATTTGTACGATCTTTCTCTGTACCAGAAAATTCTTACGCAAAGA
AATCATTTTTTGAAACAGCTGCAAAGCAGGAAACAGACTGACCGGACAATGCTCGACGTTCTGACTGAACAGCTGATCGA
GGCAGCAGCAAAGGTTGTCGTAAAACGCCTGCAATTTACAGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCGGGAA
TTTCAAGAGGGCTTGAAGAGCTGACGCTGAAGTATCAGACGGCTCTTGAGGTATCAGATCCCGAAGACTTGTCGAAAATA
GGAGATAGTTACCAAAGGGCGTTTTCAAAGCTAAGAGAAAAAGAAATTGAGCGGGGTGTAACGCTGTCAGGACCTCATCG
GGATGATGTTCTTTTTTATGTGAACGGACGCGATGTGCAAACATATGGTTCTCAGGGGCAGCAACGGACAACGGCATTGT
CACTCAAGCTGGCGGAAATTGACTTGATTCATGAAGAAATCGGAGAATACCCTATCTTACTTTTGGATGATGTGCTGAGT
GAGCTGGATGACTATCGGCAGTCGCATTTGCTTCATACGATTCAAGGCCGTGTTCAAACGTTTGTCACTACCACAAGTGT
AGATGGCATTGATCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

95.676

100

0.957

Multiple sequence alignment