Detailed information NTG0231244

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CXB56_RS08720
• Genome accession: NZ_CP027205
• Coordinates: 1086694..1087686 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WCHEC025943
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1081694..1092686

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXB56_RS08690 (CXB56_08930)	ispD	1081755..1082465 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CXB56_RS08695 (CXB56_08935)	ispF	1082465..1082944 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CXB56_RS08700 (CXB56_08940)	truD	1082941..1083990 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CXB56_RS08705 (CXB56_08945)	surE	1083971..1084732 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
CXB56_RS08710 (CXB56_08950)	pcm	1084726..1085352 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CXB56_RS08715 (CXB56_08955)	nlpD	1085537..1086631 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CXB56_RS08720 (CXB56_08960)	rpoS	1086694..1087686 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CXB56_RS08725 (CXB56_08965)	ygbN	1087780..1089144 (-)	1365	WP_000104456.1	GntP family transporter	-
CXB56_RS08730 (CXB56_08970)	ygbM	1089233..1090009 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
CXB56_RS08735 (CXB56_08975)	ygbL	1090014..1090652 (-)	639	WP_001278994.1	aldolase	-
CXB56_RS08740 (CXB56_08980)	otnK	1090649..1091911 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=231244 CXB56_RS08720 WP_000081550.1 1086694..1087686(+) (rpoS) [Escherichia coli strain WCHEC025943]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=231244 CXB56_RS08720 WP_000081550.1 1086694..1087686(+) (rpoS) [Escherichia coli strain WCHEC025943]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715