Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   S100757_RS13040 Genome accession   NZ_CP021499
Coordinates   2424190..2424957 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis subsp. subtilis strain SRCM100757     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2419190..2429957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100757_RS13020 (S100757_02581) ppsR 2419365..2420177 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  S100757_RS13025 (S100757_02582) ccpN 2420203..2420841 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  S100757_RS13030 (S100757_02583) glyS 2420974..2423013 (-) 2040 WP_046160602.1 glycine--tRNA ligase subunit beta -
  S100757_RS13035 (S100757_02584) glyQ 2423006..2423893 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  S100757_RS13040 (S100757_02585) recO 2424190..2424957 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  S100757_RS13045 (S100757_02586) yqzL 2424994..2425137 (-) 144 WP_003230053.1 YqzL family protein -
  S100757_RS13050 (S100757_02587) era 2425285..2426190 (-) 906 WP_087614624.1 GTPase Era -
  S100757_RS13055 (S100757_02588) - 2426171..2426581 (-) 411 WP_032722130.1 cytidine deaminase -
  S100757_RS13060 (S100757_02589) unpK 2426700..2427071 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  S100757_RS13065 (S100757_02590) ybeY 2427052..2427525 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  S100757_RS13070 pgpH 2427526..2429660 (-) 2135 Protein_2532 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=231222 S100757_RS13040 WP_014477369.1 2424190..2424957(-) (recO) [Bacillus subtilis subsp. subtilis strain SRCM100757]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=231222 S100757_RS13040 WP_014477369.1 2424190..2424957(-) (recO) [Bacillus subtilis subsp. subtilis strain SRCM100757]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAATTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment