Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   S100757_RS11495 Genome accession   NZ_CP021499
Coordinates   2155018..2155638 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM100757     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2150018..2160638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100757_RS11455 (S100757_02268) ptsA 2151149..2151655 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  S100757_RS11460 (S100757_02269) ypqA 2151793..2152212 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  S100757_RS11465 (S100757_02270) sppG 2152233..2152610 (-) 378 WP_004398696.1 YppG family protein -
  S100757_RS11470 (S100757_02271) yppF 2152798..2152986 (+) 189 WP_003230690.1 YppF family protein -
  S100757_RS11475 (S100757_02272) yppE 2153025..2153396 (-) 372 WP_003246080.1 YppE family protein -
  S100757_RS11480 (S100757_02273) yppD 2153442..2153687 (-) 246 WP_004398488.1 YppD family protein -
  S100757_RS11485 (S100757_02274) sspM 2153886..2153990 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  S100757_RS11490 (S100757_02275) yppC 2154015..2154977 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  S100757_RS11495 (S100757_02276) recU 2155018..2155638 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  S100757_RS11500 (S100757_02277) ponA 2155660..2158404 (+) 2745 WP_046160510.1 PBP1A family penicillin-binding protein -
  S100757_RS11505 (S100757_02278) ypoC 2158480..2158974 (-) 495 WP_009967579.1 YpoC family protein -
  S100757_RS11510 (S100757_02279) nth 2158971..2159630 (-) 660 WP_009967580.1 endonuclease III -
  S100757_RS11515 (S100757_02280) dnaD 2159649..2160347 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=231210 S100757_RS11495 WP_004399067.1 2155018..2155638(+) (recU) [Bacillus subtilis subsp. subtilis strain SRCM100757]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=231210 S100757_RS11495 WP_004399067.1 2155018..2155638(+) (recU) [Bacillus subtilis subsp. subtilis strain SRCM100757]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment