NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	CSB68_RS08485	Genome accession	NZ_CP027183
Coordinates	1733657..1734358 (-)	Length	233 a.a.
NCBI ID	WP_000594572.1	Uniprot ID	A0ABX6CID0
Organism	Acinetobacter baumannii strain AR_0052
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1728657..1739358

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSB68_RS08455 (CSB68_1706)	-	1728963..1729406 (-)	444	WP_001246675.1	SRPBCC family protein	-
CSB68_RS08460 (CSB68_1707)	tadA	1729476..1729979 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
CSB68_RS08465 (CSB68_1708)	-	1729986..1731110 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
CSB68_RS08470 (CSB68_1709)	ung	1731107..1731820 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
CSB68_RS08475 (CSB68_1710)	-	1731871..1732467 (-)	597	WP_000908455.1	6-pyruvoyl trahydropterin synthase family protein	-
CSB68_RS08480 (CSB68_1711)	gspK	1732698..1733657 (-)	960	WP_000301460.1	type II secretion system minor pseudopilin GspK	-
CSB68_RS08485 (CSB68_1712)	xcpW	1733657..1734358 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
CSB68_RS08490 (CSB68_1713)	xcpV	1734358..1734738 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
CSB68_RS08495 (CSB68_1714)	-	1734728..1735282 (-)	555	WP_087933375.1	type II secretion system protein	-
CSB68_RS08500 (CSB68_1715)	-	1735292..1735900 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
CSB68_RS08505 (CSB68_1716)	-	1735938..1736711 (-)	774	WP_000497304.1	TatD family hydrolase	-
CSB68_RS08510 (CSB68_1717)	-	1736729..1737070 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
CSB68_RS08515 (CSB68_1718)	-	1737082..1738062 (-)	981	WP_001075408.1	DNA polymerase III subunit delta'	-
CSB68_RS08520 (CSB68_1719)	kdsB	1738074..1738835 (-)	762	WP_000680702.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26613.59 Da Isoelectric Point: 9.5501

                                >NTDB_id=231171 CSB68_RS08485 WP_000594572.1 1733657..1734358(-) (xcpW) [Acinetobacter baumannii strain AR_0052]

MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=231171 CSB68_RS08485 WP_000594572.1 1733657..1734358(-) (xcpW) [Acinetobacter baumannii strain AR_0052]

ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991

Detailed information NTG0231171