Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   S101444_RS11500 Genome accession   NZ_CP021498
Coordinates   2154997..2155617 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101444     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2149997..2160617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101444_RS11460 (S101444_02277) ptsA 2151128..2151634 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  S101444_RS11465 (S101444_02278) ypqA 2151772..2152191 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  S101444_RS11470 (S101444_02279) sppG 2152212..2152589 (-) 378 WP_004398696.1 YppG family protein -
  S101444_RS11475 (S101444_02280) yppF 2152777..2152965 (+) 189 WP_003230690.1 YppF family protein -
  S101444_RS11480 (S101444_02281) yppE 2153004..2153375 (-) 372 WP_003246080.1 YppE family protein -
  S101444_RS11485 (S101444_02282) yppD 2153421..2153666 (-) 246 WP_004398488.1 YppD family protein -
  S101444_RS11490 (S101444_02283) sspM 2153865..2153969 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  S101444_RS11495 (S101444_02284) yppC 2153994..2154956 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  S101444_RS11500 (S101444_02285) recU 2154997..2155617 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  S101444_RS11505 (S101444_02286) ponA 2155639..2158383 (+) 2745 WP_046160510.1 PBP1A family penicillin-binding protein -
  S101444_RS11510 (S101444_02287) ypoC 2158459..2158953 (-) 495 WP_009967579.1 YpoC family protein -
  S101444_RS11515 (S101444_02288) nth 2158950..2159609 (-) 660 WP_009967580.1 endonuclease III -
  S101444_RS11520 (S101444_02289) dnaD 2159628..2160326 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=231131 S101444_RS11500 WP_004399067.1 2154997..2155617(+) (recU) [Bacillus subtilis subsp. subtilis strain SRCM101444]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=231131 S101444_RS11500 WP_004399067.1 2154997..2155617(+) (recU) [Bacillus subtilis subsp. subtilis strain SRCM101444]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment