Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   S101444_RS08240 Genome accession   NZ_CP021498
Coordinates   1553165..1553443 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis strain SRCM101444     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1548165..1558443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101444_RS08220 (S101444_01631) panEB 1549353..1550264 (+) 912 WP_014479685.1 ketopantoate reductase family protein -
  S101444_RS08225 (S101444_01632) ampS 1550298..1551530 (-) 1233 WP_003232341.1 aminopeptidase -
  S101444_RS08230 (S101444_01633) ykpC 1551639..1551773 (-) 135 WP_003238865.1 protein YkpC -
  S101444_RS08235 (S101444_01634) mreBH 1551874..1552881 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  S101444_RS08240 (S101444_01635) abrB 1553165..1553443 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  S101444_RS08245 (S101444_01636) kinC 1553633..1554919 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  S101444_RS08250 (S101444_01637) ykqA 1554935..1555768 (+) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  S101444_RS08255 (S101444_01638) ktrC 1555831..1556496 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  S101444_RS08260 (S101444_01639) ade 1556651..1558384 (+) 1734 WP_069837481.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=231126 S101444_RS08240 WP_003244728.1 1553165..1553443(+) (abrB) [Bacillus subtilis subsp. subtilis strain SRCM101444]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=231126 S101444_RS08240 WP_003244728.1 1553165..1553443(+) (abrB) [Bacillus subtilis subsp. subtilis strain SRCM101444]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment