Detailed information NTG0231128

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: S101444_RS09100
• Genome accession: NZ_CP021498
• Coordinates: 1725418..1726197 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain SRCM101444
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1720418..1731197

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S101444_RS09080 (S101444_01806)	trmFO	1721111..1722418 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
S101444_RS09085 (S101444_01807)	xerC	1722486..1723400 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
S101444_RS09090 (S101444_01808)	clpQ	1723413..1723958 (+)	546	WP_046160401.1	ATP-dependent protease subunit ClpQ	-
S101444_RS09095 (S101444_01809)	hslU	1723966..1725378 (+)	1413	WP_255220399.1	HslU--HslV peptidase ATPase subunit	-
S101444_RS09100 (S101444_01810)	codY	1725418..1726197 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
S101444_RS09105 (S101444_01811)	flgB	1726577..1726966 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
S101444_RS09110 (S101444_01812)	flgC	1726966..1727418 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
S101444_RS09115 (S101444_01813)	fliE	1727429..1727749 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
S101444_RS09120 (S101444_01814)	fliF	1727795..1729405 (+)	1611	WP_087614551.1	flagellar basal-body MS-ring/collar protein FliF	-
S101444_RS09125 (S101444_01815)	fliG	1729418..1730434 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
S101444_RS09130 (S101444_01816)	fliH	1730427..1731179 (+)	753	WP_183163628.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=231128 S101444_RS09100 WP_003220850.1 1725418..1726197(+) (codY) [Bacillus subtilis subsp. subtilis strain SRCM101444]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=231128 S101444_RS09100 WP_003220850.1 1725418..1726197(+) (codY) [Bacillus subtilis subsp. subtilis strain SRCM101444]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467