Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   S101444_RS05920 Genome accession   NZ_CP021498
Coordinates   1130808..1131386 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101444     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1125808..1136386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101444_RS05900 (S101444_01159) hemAT 1126319..1127617 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  S101444_RS05905 (S101444_01160) comW 1127756..1129285 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  S101444_RS05910 (S101444_01161) yhxC 1129397..1130254 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  S101444_RS05915 (S101444_01162) yhzC 1130282..1130515 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  S101444_RS05920 (S101444_01163) comK 1130808..1131386 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  S101444_RS05925 (S101444_01164) yhxD 1131433..1132332 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  S101444_RS05930 (S101444_01165) yhjA 1132549..1132818 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  S101444_RS05935 (S101444_01166) yhjB 1132862..1134331 (-) 1470 WP_046160243.1 sodium:solute symporter -
  S101444_RS05940 (S101444_01167) yhjC 1134328..1134528 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  S101444_RS05945 (S101444_01168) - 1134727..1135098 (-) 372 WP_046160244.1 hypothetical protein -
  S101444_RS05950 (S101444_01169) yhjE 1135250..1135873 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  S101444_RS05955 (S101444_01170) lepB 1135875..1136381 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=231112 S101444_RS05920 WP_029317573.1 1130808..1131386(+) (comK) [Bacillus subtilis subsp. subtilis strain SRCM101444]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=231112 S101444_RS05920 WP_029317573.1 1130808..1131386(+) (comK) [Bacillus subtilis subsp. subtilis strain SRCM101444]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment