Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CCS05_RS07940 Genome accession   NZ_CP021456
Coordinates   1629510..1631315 (-) Length   601 a.a.
NCBI ID   WP_110139732.1    Uniprot ID   A0AAJ5FKS5
Organism   Levilactobacillus brevis strain ZLB004     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1624510..1636315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCS05_RS07915 (CCS05_07915) - 1625104..1626003 (-) 900 WP_011668196.1 RluA family pseudouridine synthase -
  CCS05_RS07920 (CCS05_07920) - 1626000..1626803 (-) 804 WP_021740943.1 NAD kinase -
  CCS05_RS07925 (CCS05_07925) - 1626805..1627464 (-) 660 WP_011668198.1 GTP pyrophosphokinase -
  CCS05_RS07930 (CCS05_07930) - 1627791..1628429 (+) 639 WP_043022825.1 ClpXP adapter SpxH family protein -
  CCS05_RS07935 (CCS05_07935) - 1628591..1629454 (+) 864 WP_011668200.1 DegV family protein -
  CCS05_RS07940 (CCS05_07940) pepF 1629510..1631315 (-) 1806 WP_110139732.1 oligoendopeptidase F Regulator
  CCS05_RS07945 (CCS05_07945) - 1631382..1632476 (-) 1095 WP_110139733.1 competence protein CoiA -
  CCS05_RS07950 (CCS05_07950) trmB 1632603..1633250 (-) 648 WP_110139734.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CCS05_RS07955 (CCS05_07955) - 1633316..1634107 (-) 792 WP_043022830.1 phosphotransferase family protein -
  CCS05_RS07960 (CCS05_07960) - 1634169..1635395 (-) 1227 WP_110139735.1 ABC transporter permease -
  CCS05_RS07965 (CCS05_07965) - 1635392..1636126 (-) 735 WP_043022832.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67147.15 Da        Isoelectric Point: 4.8730

>NTDB_id=230900 CCS05_RS07940 WP_110139732.1 1629510..1631315(-) (pepF) [Levilactobacillus brevis strain ZLB004]
MKQIPKRSEVPASLTWDLTTIFPDEAAFKAAIAAIKTQTTVVAGLKGQLAQSGAALYRVTTAVFDLNRQLERVYVYASLN
NDQDTGNAAAQALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNEPRLADYQHVFDVLGQQRAHTLSVAQEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVRLSEGLYGILLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVK
THNFSAETRHYASARAAAMSRNNVPAVVYDTLVETVNDHLDSLHRYVNLRKEILDLPELHMYDLYTPITGEPSLKYTYQE
AQQMALKALAVLGPDYTANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLT
ADFMSDFYGKLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGNEAKRDAYLAYLKAGSSA
LPLDVMKQAGVDMTQPGYLQTAFATFDERLAEFTQLAHELN

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=230900 CCS05_RS07940 WP_110139732.1 1629510..1631315(-) (pepF) [Levilactobacillus brevis strain ZLB004]
GTGAAACAAATTCCGAAACGATCAGAGGTTCCCGCATCATTGACTTGGGACCTAACAACTATTTTTCCTGACGAGGCAGC
TTTTAAGGCCGCAATTGCTGCGATTAAAACGCAAACAACGGTCGTGGCCGGTTTGAAGGGACAATTGGCCCAAAGTGGGG
CCGCGTTATATCGTGTCACGACGGCGGTATTTGATTTGAATCGCCAGTTGGAGCGGGTATACGTCTATGCGTCTTTAAAC
AATGATCAGGATACCGGCAATGCTGCAGCCCAAGCATTAATGGGGCAAGCCGAGAGTTTGGTGGCAACTGTGGGTGCGGC
CACGGCTTGGTTTGAACCTGAGGTATTGGCCTTGTCAGCGGATCAGCTGCAAACGTTGATTGATAACGAACCCCGGCTGG
CAGATTATCAGCATGTGTTTGACGTATTGGGCCAGCAGCGGGCACATACGCTGTCAGTGGCGCAAGAAAAATTGTTAGCG
GGTGCTAGTGATATCTTTGGTGCGTCTGCTAAAACTTACAGCGTGCTGAGTGATGCTGATCTAAAGTTTCCAGTTGTTCA
AGACGAAGCCGGCAATGATGTGCGACTGTCAGAGGGACTGTATGGTATTTTGCTACAATCCACAACACCACGGGTGCGGC
AGCAGGCCTTTGAAGCATTATATTCGGTTTATCAACAATTCCGACATACCTTTGCCGCAACCTTAGCGAGCGAAGTCAAA
ACGCATAATTTTAGCGCTGAGACGCGTCACTATGCGAGTGCCAGAGCGGCCGCGATGAGTCGCAACAATGTGCCAGCGGT
GGTCTATGATACCTTGGTGGAAACAGTCAATGATCATTTAGACTCGCTGCATCGTTACGTTAATTTACGTAAAGAGATCT
TGGACTTGCCCGAACTGCACATGTATGACCTGTATACGCCAATTACGGGTGAACCTAGCTTGAAATACACCTACCAAGAA
GCTCAACAGATGGCGTTAAAAGCACTGGCAGTTTTGGGACCGGATTACACTGCCAATGTTCAAAAGATGTTTGATGGTCG
GGCAATTGATGTGGTTGAAAATCAGGGTAAACGGACGGGCGCTTACTCAGGCGGGATGTATGATACTAAACCGTATATTT
TGTTGAATTGGCAAGATAGCTTGGAAAGCTTGTTCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACT
CGGACAAATCAACCGTACCAGTATGGTGATTATTCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCT
GACGGACTACCTGTTGAAAACCCAGACTGACCCCAAGGTGCGAGCTTATGTATTAAACCATTATCTGGATGGCTTTAAAG
GCACGGTATACCGCCAGACGCAGTTCGCAGAATTTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACG
GCTGACTTCATGAGTGATTTCTACGGCAAACTTAATCAGCGTTATTACGGTGATGGGGTGATTTCCGATCCACAAATCGC
TGATGAATGGACCCGAATTCCACATTTCTACTATGACTACTATGTGTACCAGTACGCAACCGGGTTTGCGGCGGCCACGA
CGTTATCGCAACGAATTTTGAGTGGCAACGAGGCAAAGCGGGATGCCTACTTGGCCTATCTAAAGGCGGGAAGTTCTGCC
TTACCACTTGATGTGATGAAACAAGCGGGCGTCGATATGACGCAACCGGGCTATTTGCAGACGGCTTTTGCAACGTTCGA
CGAGCGCTTGGCAGAATTCACGCAATTGGCGCATGAATTAAACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-584)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.169

98.17

0.493

Multiple sequence alignment