Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CCO03_RS18910 Genome accession   NZ_CP021455
Coordinates   4421813..4423393 (-) Length   526 a.a.
NCBI ID   WP_087283616.1    Uniprot ID   A0A1Y0ES70
Organism   Comamonas serinivorans strain DSM 26136     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4416813..4428393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCO03_RS18890 (CCO03_18890) - 4417199..4418347 (-) 1149 WP_157667803.1 efflux RND transporter periplasmic adaptor subunit -
  CCO03_RS18895 (CCO03_18895) - 4418478..4419173 (+) 696 WP_087284943.1 response regulator transcription factor -
  CCO03_RS18900 (CCO03_18900) - 4419170..4420549 (+) 1380 WP_087283612.1 sensor histidine kinase -
  CCO03_RS18905 (CCO03_18905) - 4420654..4421577 (-) 924 WP_087283614.1 porin -
  CCO03_RS18910 (CCO03_18910) rpoN/rpoN1 4421813..4423393 (-) 1581 WP_087283616.1 RNA polymerase factor sigma-54 Machinery gene
  CCO03_RS18915 (CCO03_18915) lptB 4423405..4424202 (-) 798 WP_087283618.1 LPS export ABC transporter ATP-binding protein -
  CCO03_RS18920 (CCO03_18920) lptA 4424199..4424822 (-) 624 WP_087283620.1 lipopolysaccharide transport periplasmic protein LptA -
  CCO03_RS18925 (CCO03_18925) - 4424927..4425559 (-) 633 WP_087283621.1 thiol:disulfide interchange protein DsbA/DsbL -
  CCO03_RS18930 (CCO03_18930) - 4425704..4426411 (-) 708 WP_087283623.1 SPOR domain-containing protein -
  CCO03_RS18935 (CCO03_18935) argS 4426414..4428207 (-) 1794 WP_087283625.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 526 a.a.        Molecular weight: 58277.22 Da        Isoelectric Point: 4.5595

>NTDB_id=230877 CCO03_RS18910 WP_087283616.1 4421813..4423393(-) (rpoN/rpoN1) [Comamonas serinivorans strain DSM 26136]
MKQGLSLRVSQHLTLTPQLQQSIRLLQLSTLELDQEVEQMLGDNPFLDREDGEAPQEDFGLAQADAHVSVGDRISERASE
TESASERPDREPAGGDDEYGASSGDTDNDAGVNWEGDGSNALSPDDGEWGGDALPRGAGAPDDDALDASERTGMHESLYD
TLHRQALALHLSDVDRAAVYFIIESLNEDGYLEESVDDLADGLRPTDVDQRDELIDRLMLALRLVQAMEPTGVGARDLSE
CMCLQLDALLQANPDDAIATVARDIVRHPIDLIARRDARKLSQLCGFSETTVRTGLACISRLEPKPGRRFVNVERNIVVP
DVIVSRIEGNGANPRFRVRLNQEVMPKLRVNDVYANALRGGKSDSHQALQQRLQEARWFIKNIQQRFDTILRVSQAIVER
QRSFFIHGELAMQPLVLREIADELGLHESTISRVTTAKYMATPFGTFELKYFFGSGLDTEAGGSASSTAVRALIKQFIAE
ENPKKPLSDNQISEMLKEQGIDCARRTVAKYREAMRIPTTTLRRAL

Nucleotide


Download         Length: 1581 bp        

>NTDB_id=230877 CCO03_RS18910 WP_087283616.1 4421813..4423393(-) (rpoN/rpoN1) [Comamonas serinivorans strain DSM 26136]
ATGAAGCAAGGCCTGTCGCTCCGTGTCTCGCAGCACCTGACGCTGACCCCGCAGCTGCAGCAGTCGATCCGGCTGTTGCA
GCTGTCCACGTTGGAACTCGACCAGGAGGTCGAGCAGATGCTGGGGGACAACCCCTTCCTCGACCGTGAAGACGGCGAAG
CGCCGCAGGAGGACTTCGGTCTGGCCCAGGCCGATGCCCACGTGAGCGTCGGGGACCGCATCAGCGAGCGCGCCAGCGAA
ACCGAGTCTGCCAGCGAGCGTCCGGACCGTGAGCCAGCCGGTGGTGATGACGAGTATGGGGCATCCTCCGGTGATACAGA
CAACGACGCTGGCGTGAACTGGGAGGGTGATGGCTCCAACGCCCTGTCGCCCGACGATGGCGAGTGGGGCGGCGATGCGC
TGCCGCGCGGCGCTGGCGCCCCCGACGACGACGCGCTGGATGCGAGCGAGCGCACCGGCATGCACGAGTCGCTCTACGAC
ACGCTGCACCGCCAGGCCCTGGCCCTGCACCTGTCCGACGTGGACCGCGCGGCGGTGTACTTCATCATCGAATCGCTGAA
CGAAGACGGCTACCTCGAAGAGTCCGTTGACGACCTGGCCGACGGCCTGCGGCCGACCGACGTGGACCAGCGCGACGAGC
TGATCGACCGCCTGATGCTGGCGCTGCGCCTGGTGCAGGCCATGGAGCCCACCGGCGTGGGCGCGCGCGACCTCAGCGAA
TGCATGTGCCTGCAGCTCGACGCACTGCTGCAGGCCAACCCCGACGACGCCATCGCCACCGTGGCGCGCGACATCGTGCG
CCACCCGATCGACCTGATCGCGCGCCGCGATGCGCGCAAGCTGTCGCAGCTGTGCGGCTTCAGCGAAACCACGGTGCGCA
CCGGCCTGGCCTGCATCAGCCGGCTCGAGCCCAAGCCCGGTCGCCGCTTCGTCAACGTCGAGCGCAACATCGTGGTGCCC
GACGTCATCGTCTCGCGCATCGAGGGCAACGGCGCCAACCCGCGTTTTCGCGTGCGCCTGAACCAGGAGGTGATGCCCAA
GCTGCGCGTGAACGACGTCTACGCCAATGCCCTGCGCGGCGGCAAGAGCGACTCGCACCAGGCCCTGCAACAACGGCTGC
AAGAAGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCTTGCGCGTGTCGCAGGCCATCGTCGAGCGC
CAGCGCAGCTTCTTCATCCATGGCGAGCTGGCCATGCAGCCACTGGTGCTGCGCGAAATCGCCGATGAGCTGGGCCTGCA
CGAATCGACCATCTCGCGCGTGACCACGGCCAAGTACATGGCCACGCCGTTCGGCACCTTCGAGCTGAAGTATTTCTTCG
GCTCCGGGCTGGACACGGAGGCCGGTGGCAGCGCCTCGAGCACGGCGGTGCGGGCGCTCATCAAGCAGTTCATCGCCGAA
GAAAACCCCAAGAAGCCGCTGTCGGACAACCAGATCTCCGAGATGCTCAAGGAGCAGGGCATCGACTGCGCGCGCCGCAC
GGTGGCCAAGTACCGCGAGGCCATGCGCATCCCCACGACCACATTGCGTCGAGCATTGTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(368-524)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(152-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.113

100

0.485

Multiple sequence alignment