Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BtSCAC15_RS09950 Genome accession   NZ_CP021436
Coordinates   1904687..1904965 (+) Length   92 a.a.
NCBI ID   WP_127063914.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain C15     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1902557..1907604 1904687..1904965 within 0


Gene organization within MGE regions


Location: 1902557..1907604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BtSCAC15_RS09940 (BtSCAC15_10210) - 1902557..1903990 (+) 1434 WP_127063912.1 IS4-like element IS231Q family transposase -
  BtSCAC15_RS09945 (BtSCAC15_10215) - 1904146..1904652 (+) 507 WP_164727808.1 topoisomerase C-terminal repeat-containing protein -
  BtSCAC15_RS09950 (BtSCAC15_10220) abrB 1904687..1904965 (+) 279 WP_127063914.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BtSCAC15_RS09955 (BtSCAC15_10225) - 1905118..1905981 (+) 864 WP_127063915.1 zincin-like metallopeptidase domain-containing protein -
  BtSCAC15_RS09960 (BtSCAC15_10230) - 1906375..1907604 (-) 1230 WP_127063753.1 IS110 family transposase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10350.14 Da        Isoelectric Point: 5.8598

>NTDB_id=230776 BtSCAC15_RS09950 WP_127063914.1 1904687..1904965(+) (abrB) [Bacillus thuringiensis strain C15]
MKSTGMTRKVDDLGRIVIPMELRRTLGIEEKGPMEIFVEDDKIILQKYQSHQACMITGDVSEKNCSLANGKIVLSPEGAE
LLVKEIQQYLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=230776 BtSCAC15_RS09950 WP_127063914.1 1904687..1904965(+) (abrB) [Bacillus thuringiensis strain C15]
ATGAAATCAACAGGAATGACCCGCAAAGTTGATGATTTGGGACGAATTGTAATTCCCATGGAGCTTAGAAGAACATTAGG
GATCGAAGAAAAAGGCCCAATGGAAATTTTTGTGGAAGATGATAAAATCATTTTACAAAAATATCAATCTCACCAAGCGT
GTATGATAACTGGGGATGTTTCGGAAAAAAATTGTTCTCTAGCTAACGGAAAGATTGTTCTCAGTCCAGAAGGAGCAGAA
CTTTTAGTAAAAGAAATACAGCAATATCTTGTTAAATAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

62.222

97.826

0.609

Multiple sequence alignment