Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BtSCAC15_RS00220 Genome accession   NZ_CP021436
Coordinates   40750..41034 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain C15     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35750..46034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BtSCAC15_RS00185 (BtSCAC15_00185) tmk 35942..36568 (+) 627 WP_000677221.1 dTMP kinase -
  BtSCAC15_RS00190 (BtSCAC15_00190) holB 36604..37587 (+) 984 WP_000169561.1 DNA polymerase III subunit delta' -
  BtSCAC15_RS00195 (BtSCAC15_00195) - 37593..38420 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  BtSCAC15_RS00200 (BtSCAC15_00200) yabA 38435..38785 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  BtSCAC15_RS00205 (BtSCAC15_00205) - 38868..39608 (+) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BtSCAC15_RS00210 (BtSCAC15_00210) - 39595..39885 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  BtSCAC15_RS00215 (BtSCAC15_00215) rsmI 39854..40729 (+) 876 WP_000267818.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BtSCAC15_RS00220 (BtSCAC15_00220) abrB 40750..41034 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BtSCAC15_RS00225 (BtSCAC15_00225) metG 41493..43502 (+) 2010 WP_071740796.1 methionine--tRNA ligase -
  BtSCAC15_RS00230 (BtSCAC15_00230) - 43669..44436 (+) 768 WP_000895851.1 TatD family hydrolase -
  BtSCAC15_RS00235 (BtSCAC15_00235) rnmV 44651..45208 (+) 558 WP_000692843.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=230757 BtSCAC15_RS00220 WP_000843036.1 40750..41034(-) (abrB) [Bacillus thuringiensis strain C15]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=230757 BtSCAC15_RS00220 WP_000843036.1 40750..41034(-) (abrB) [Bacillus thuringiensis strain C15]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment