Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CBW65_RS08190 Genome accession   NZ_CP021434
Coordinates   1757567..1758940 (+) Length   457 a.a.
NCBI ID   WP_087456425.1    Uniprot ID   A0A1Y0IL75
Organism   Tumebacillus avium strain AR23208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1752567..1763940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBW65_RS08170 (CBW65_08160) - 1752829..1753290 (+) 462 WP_087456421.1 CtsR family transcriptional regulator -
  CBW65_RS08175 (CBW65_08165) - 1753311..1753847 (+) 537 WP_087456422.1 UvrB/UvrC motif-containing protein -
  CBW65_RS08180 (CBW65_08170) - 1753851..1754927 (+) 1077 WP_087456423.1 protein arginine kinase -
  CBW65_RS08185 (CBW65_08175) - 1754974..1757418 (+) 2445 WP_087456424.1 ATP-dependent Clp protease ATP-binding subunit -
  CBW65_RS08190 (CBW65_08180) radA 1757567..1758940 (+) 1374 WP_087456425.1 DNA repair protein RadA Machinery gene
  CBW65_RS08195 (CBW65_08185) disA 1758946..1760022 (+) 1077 WP_087456426.1 DNA integrity scanning diadenylate cyclase DisA -
  CBW65_RS08200 (CBW65_08190) pssA 1760051..1760779 (+) 729 WP_087456427.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  CBW65_RS08205 (CBW65_08195) - 1761080..1762156 (+) 1077 WP_087456428.1 PIN/TRAM domain-containing protein -
  CBW65_RS08210 (CBW65_08200) ispD 1762231..1762926 (+) 696 WP_087456429.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CBW65_RS08215 (CBW65_08205) ispF 1762923..1763402 (+) 480 WP_157721837.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49775.25 Da        Isoelectric Point: 6.9989

>NTDB_id=230721 CBW65_RS08190 WP_087456425.1 1757567..1758940(+) (radA) [Tumebacillus avium strain AR23208]
MAKYKSKFVCQDCGYESPKWMGKCPGCGQWNTMAEEVVSKPTAQVGSQILQQSEPAIAHKITEINTVNEARTHSGLVEFD
RVLGGGVVKGSLVLVGGDPGIGKSTLLLQTSNSIAARGNKVLYVSGEESAKQIKLRADRLEALSDNLYILPETDLERVEQ
HIKLLNPDFLIVDSIQTVYRPGLQSAPGSVGQVRECTAFLLRIAKSLDIATFIVGHVTKEGAIAGPRMLEHMVDAVLYFE
GERHHTYRILRAVKNRFGSTNEIGIFEMREKGLEEVHNPSELFLSERPHGVAGSCVIASMEGTRPVLVEIQALVTPSSYG
NPRRMATGLDHNRVSLIMAVLEKRMGLYLQSQDAYVNVAGGVRLDEPAVDLGIALALGSSFREKAMGPTDCFIGEVGLTG
EVRGVSRIEQRVREAMKLGFTRVIVPTKNLRGWQPPADIQVIGVETVQEAFQVALGG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=230721 CBW65_RS08190 WP_087456425.1 1757567..1758940(+) (radA) [Tumebacillus avium strain AR23208]
ATGGCAAAGTATAAATCAAAATTTGTGTGCCAAGACTGTGGATATGAAAGTCCCAAATGGATGGGCAAATGTCCGGGATG
CGGTCAGTGGAATACGATGGCCGAAGAAGTTGTGAGCAAGCCAACTGCGCAGGTCGGCTCGCAAATCTTGCAGCAGTCCG
AGCCTGCCATTGCACATAAGATCACCGAGATCAACACGGTGAACGAAGCGCGCACGCACAGCGGCCTGGTCGAATTTGAC
CGCGTGCTGGGCGGCGGTGTCGTCAAAGGATCGCTGGTGCTTGTCGGCGGCGACCCGGGGATCGGGAAATCGACCTTGCT
GCTGCAAACGTCGAACTCGATCGCCGCGCGCGGCAACAAAGTGCTGTACGTATCGGGCGAGGAATCGGCGAAGCAGATCA
AGTTGCGCGCAGACCGTCTGGAAGCATTGTCCGACAATCTGTACATTTTGCCGGAGACCGATCTGGAGCGGGTCGAGCAG
CACATCAAGCTGCTCAATCCCGATTTTCTGATCGTCGACTCCATTCAGACCGTATACCGTCCCGGCCTGCAATCGGCGCC
TGGCAGCGTCGGGCAGGTCCGCGAGTGCACCGCATTTTTGCTGCGCATTGCCAAGTCGCTCGATATCGCCACCTTTATCG
TTGGTCACGTCACCAAAGAAGGCGCGATCGCAGGTCCGCGAATGCTGGAGCATATGGTCGACGCCGTGCTGTACTTTGAA
GGCGAGCGTCACCACACCTACCGCATCTTGCGGGCGGTGAAAAACCGCTTTGGCTCGACCAACGAGATCGGGATTTTCGA
GATGCGGGAAAAAGGGTTGGAGGAAGTGCACAACCCGTCCGAACTGTTTCTGTCCGAACGTCCGCACGGCGTCGCAGGCT
CCTGCGTCATCGCCAGCATGGAGGGCACGCGCCCGGTGCTGGTCGAGATCCAGGCGCTGGTCACGCCTTCCAGCTACGGC
AACCCGCGCCGCATGGCGACGGGGCTGGATCACAACCGCGTCAGCCTGATCATGGCGGTGCTGGAGAAGCGGATGGGGTT
ATACCTGCAGTCGCAGGATGCATATGTCAACGTGGCAGGCGGCGTTCGTCTCGATGAACCGGCTGTCGACCTCGGCATCG
CTTTGGCGCTCGGATCTTCGTTCCGGGAGAAAGCGATGGGGCCGACCGACTGTTTTATCGGCGAAGTGGGACTCACCGGC
GAAGTGCGCGGCGTATCGCGCATCGAGCAGCGGGTCCGGGAAGCGATGAAGCTCGGGTTCACCCGGGTGATCGTGCCGAC
GAAGAACCTGCGCGGCTGGCAGCCCCCGGCCGACATTCAAGTGATTGGTGTTGAGACGGTACAGGAGGCGTTCCAAGTAG
CTTTAGGGGGATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-221)

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0IL75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.171

100

0.681
  radA Streptococcus mitis NCTC 12261

59.735

98.906

0.591
  radA Streptococcus mitis SK321

59.735

98.906

0.591
  radA Streptococcus pneumoniae Rx1

59.513

98.906

0.589
  radA Streptococcus pneumoniae D39

59.513

98.906

0.589
  radA Streptococcus pneumoniae R6

59.513

98.906

0.589
  radA Streptococcus pneumoniae TIGR4

59.513

98.906

0.589

Multiple sequence alignment