Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GBS_RS05615 Genome accession   NC_004368
Coordinates   1089804..1090766 (-) Length   320 a.a.
NCBI ID   WP_000735588.1    Uniprot ID   Q8DZT7
Organism   Streptococcus agalactiae NEM316     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1084804..1095766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS_RS05595 (gbs1041) dprA 1086005..1086847 (-) 843 WP_001015250.1 DNA-processing protein DprA Machinery gene
  GBS_RS05600 (gbs1042) - 1086985..1088013 (-) 1029 WP_000162771.1 siderophore ABC transporter substrate-binding protein -
  GBS_RS05605 (gbs1043) - 1088075..1088836 (-) 762 WP_000614751.1 ABC transporter ATP-binding protein -
  GBS_RS05610 (gbs1044) - 1088833..1089807 (-) 975 WP_000588576.1 iron chelate uptake ABC transporter family permease subunit -
  GBS_RS05615 (gbs1045) ceuB 1089804..1090766 (-) 963 WP_000735588.1 ABC transporter permease Machinery gene
  GBS_RS05620 (gbs1046) - 1091005..1091553 (-) 549 WP_000136509.1 sugar O-acetyltransferase -
  GBS_RS05625 (gbs1047) - 1091574..1092335 (-) 762 WP_000201088.1 ribonuclease HII -
  GBS_RS05630 (gbs1048) ylqF 1092322..1093173 (-) 852 WP_000201281.1 ribosome biogenesis GTPase YlqF -
  GBS_RS05635 (gbs1049) - 1093449..1094021 (-) 573 WP_001231800.1 L,D-transpeptidase -
  GBS_RS05640 (gbs1050) - 1094222..1095706 (-) 1485 WP_000256015.1 carbon starvation protein A -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34880.98 Da        Isoelectric Point: 8.4842

>NTDB_id=23072 GBS_RS05615 WP_000735588.1 1089804..1090766(-) (ceuB) [Streptococcus agalactiae NEM316]
MKKLLTTPVMGCTLVILSLTSLFVGVKSIPLEQITHLDQSQVDIFLTSRLPRTISILISGASLSVCGLLMQQLTQNKFVS
PTTSGTMDWAKLGVVVTLIFFKNTSIFIQLCIASGFAILGSLLFVTILKMITFKDNIFIPLIGLMLGQIVAAATVFLGTH
FQVLQSVNSWLQGNFSIMTSHRYEILYLALPCLFLVYFFAHQFTIVGLGESFAKNLGVAYEKMIYFGLVLVSIMTSLVII
IVGALPFLGLIVPNLISITKGDHMSSTILETSLLGACIVMICDLFGRLVIFPYEVSIGVTLGVLGSAFFLISIIRNEGKS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=23072 GBS_RS05615 WP_000735588.1 1089804..1090766(-) (ceuB) [Streptococcus agalactiae NEM316]
ATGAAAAAGCTATTAACCACTCCTGTAATGGGTTGTACTTTGGTTATACTTTCTCTAACGTCCCTATTTGTTGGTGTGAA
ATCTATCCCACTGGAGCAAATAACACACCTTGATCAATCACAGGTAGATATTTTTTTAACGAGTCGCTTACCAAGAACCA
TTAGTATCCTAATATCTGGTGCAAGTTTGTCAGTCTGTGGCCTGCTGATGCAACAACTCACCCAAAACAAGTTCGTTTCA
CCGACAACTTCAGGGACTATGGATTGGGCGAAATTAGGAGTAGTTGTTACGCTGATTTTCTTTAAAAATACCTCTATTTT
TATTCAACTATGTATAGCTTCAGGTTTTGCCATTTTAGGATCGCTTCTTTTTGTAACCATTTTAAAAATGATTACTTTTA
AGGATAATATTTTTATACCTCTTATCGGACTGATGCTTGGACAAATTGTAGCAGCAGCAACAGTATTTTTAGGAACACAT
TTTCAAGTACTACAATCTGTCAACAGTTGGCTTCAAGGTAATTTTTCCATCATGACTAGCCATCGCTACGAAATTCTTTA
CTTAGCATTGCCATGTTTGTTTTTAGTATATTTTTTTGCTCATCAGTTTACCATTGTTGGGCTTGGAGAAAGCTTCGCTA
AGAATTTAGGGGTTGCTTATGAAAAGATGATTTACTTTGGTTTAGTTTTGGTTTCAATTATGACATCCCTAGTCATTATT
ATCGTAGGAGCTTTACCTTTCTTAGGTTTAATCGTACCTAATCTAATTAGCATAACTAAAGGAGATCATATGTCCTCAAC
TATCTTAGAGACATCGCTTTTAGGGGCTTGTATCGTCATGATATGTGATCTTTTTGGTCGCTTAGTTATTTTTCCTTATG
AAGTCTCAATAGGAGTTACGCTAGGAGTATTGGGTAGTGCCTTTTTCCTGATTTCAATTATAAGAAATGAGGGAAAATCA
TGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DZT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.649

99.688

0.475

Multiple sequence alignment