Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CV_RS18950 Genome accession   NC_005085
Coordinates   4124428..4125651 (-) Length   407 a.a.
NCBI ID   WP_011137374.1    Uniprot ID   -
Organism   Chromobacterium violaceum ATCC 12472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4119428..4130651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV_RS18920 (CV3821) tsaE 4120154..4120645 (+) 492 WP_011137368.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  CV_RS18925 (CV3822) - 4120606..4121847 (+) 1242 WP_043596725.1 N-acetylmuramoyl-L-alanine amidase -
  CV_RS18930 (CV3823) yacG 4121920..4122111 (-) 192 WP_011137370.1 DNA gyrase inhibitor YacG -
  CV_RS18935 (CV3824) zapD 4122117..4122875 (-) 759 WP_011137371.1 cell division protein ZapD -
  CV_RS18940 (CV3825) coaE 4122912..4123526 (-) 615 WP_011137372.1 dephospho-CoA kinase -
  CV_RS18945 (CV3826) - 4123511..4124428 (-) 918 WP_011137373.1 prepilin peptidase -
  CV_RS18950 (CV3827) pilC 4124428..4125651 (-) 1224 WP_011137374.1 type II secretion system F family protein Machinery gene
  CV_RS18955 (CV3828) pilF 4125777..4127483 (-) 1707 WP_011137375.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CV_RS18960 (CV3829) - 4127652..4128758 (-) 1107 WP_011137376.1 porin -
  CV_RS18965 (CV3831) - 4129165..4129482 (-) 318 WP_011137378.1 ComEA family DNA-binding protein -
  CV_RS18970 (CV3832) - 4129551..4130372 (-) 822 WP_011137379.1 cytochrome C assembly family protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44911.77 Da        Isoelectric Point: 10.0089

>NTDB_id=23072 CV_RS18950 WP_011137374.1 4124428..4125651(-) (pilC) [Chromobacterium violaceum ATCC 12472]
MATTAAKKANPGYIWEWEGKDKSGKMIRGELRAESEAVAKTQLRRQGINVAKIRRRRSGFGKKITEKDITLFTRQLSTMM
RAGVPLLQAFDIAAKGHSNPAVTRMLLEVRADVETGLSLAEAFRKRPLYFDKLFCNIIAAGEAGGVLDTLLDKLATYKEK
VMAIKSKIKSAMIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDQFVHFWWLIFGTLFGAIFAF
FYAFKRTPKMQEQMDRILLRLPVIGDIIRKATIARWARTLSTLFSAGVPLVEALDSVGGAAGNQVYAEATRRIQADVSTG
SSLNYSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGILIGGLVIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=23072 CV_RS18950 WP_011137374.1 4124428..4125651(-) (pilC) [Chromobacterium violaceum ATCC 12472]
ATGGCGACCACGGCAGCCAAAAAGGCGAATCCGGGCTACATCTGGGAATGGGAAGGCAAGGACAAGTCCGGCAAGATGAT
ACGGGGCGAGCTGCGCGCCGAGTCGGAGGCCGTCGCCAAGACCCAGTTGCGGCGGCAGGGCATCAATGTCGCCAAGATCC
GCCGGCGGCGCAGCGGTTTCGGCAAGAAGATCACCGAAAAGGACATCACGCTGTTCACCCGCCAATTGTCGACGATGATG
CGCGCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGCGGCCAAGGGCCACAGCAATCCAGCGGTGACGCGGATGCTGCT
GGAGGTGCGGGCGGATGTCGAAACCGGCCTGTCGCTGGCCGAGGCCTTCCGCAAGCGCCCGCTGTATTTCGACAAGCTGT
TCTGCAACATCATCGCGGCCGGCGAGGCGGGCGGCGTGCTGGATACCTTGCTGGACAAGCTGGCCACCTATAAGGAAAAG
GTGATGGCCATCAAGTCCAAGATCAAGTCGGCGATGATCTATCCGTCGGCCATCGTCGGCACCGCCTTCATCATCACCGC
GGTGATCATGATTTACGTGATCCCGGCGTTCAAGGACCTGTTCTCCAGCTTCGGCGCCAATCTGCCGGCGCCGACGCTGT
TCGTGATCTGGCTGTCGGACCAGTTCGTCCATTTCTGGTGGCTGATCTTCGGCACGCTGTTCGGCGCGATATTCGCCTTT
TTCTACGCGTTCAAGCGCACGCCCAAGATGCAGGAGCAGATGGACCGCATCCTGCTGCGCTTGCCGGTGATCGGCGACAT
CATACGCAAGGCCACCATCGCGCGCTGGGCGCGCACCTTGTCCACGCTGTTTTCCGCCGGCGTCCCGCTGGTGGAGGCGC
TGGACTCGGTCGGCGGGGCGGCCGGCAATCAGGTTTACGCCGAGGCGACGCGGCGCATCCAGGCCGATGTCAGCACCGGT
TCCAGCCTCAATTACTCGATGCAGCGCACCGACTTGTTCCCTAACATGGTGCTGCAGATGACTTCGATAGGCGAAGAGTC
CGGCTCGCTCGACCAGATGCTGGACAAGGTGGCCGACTTTTACGAGGAAGAAGTGGATAATGCGGTGGCCGCGCTGTCCA
GCCTGCTGGAGCCGGCGATCATGGTGATTCTGGGGATATTGATAGGCGGGTTGGTGATCGCGATGTACATGCCGATTTTC
AAGATGGGCCAGGTGGTGGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.713

99.263

0.533
  pilC Pseudomonas stutzeri DSM 10701

53.218

99.263

0.528
  pilG Neisseria gonorrhoeae MS11

53.453

96.069

0.514
  pilG Neisseria meningitidis 44/76-A

53.453

96.069

0.514
  pilC Acinetobacter baylyi ADP1

50.369

100

0.504
  pilC Acinetobacter baumannii D1279779

49.386

100

0.494
  pilC Vibrio campbellii strain DS40M4

37.74

100

0.386
  pilC Vibrio cholerae strain A1552

36.935

97.789

0.361
  pilC Thermus thermophilus HB27

36.842

98.034

0.361

Multiple sequence alignment