Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   CCK83_RS08295 Genome accession   NZ_CP021428
Coordinates   1731252..1733480 (-) Length   742 a.a.
NCBI ID   WP_005079289.1    Uniprot ID   A0AAN4MHP0
Organism   Acinetobacter pittii strain HUMV-6483     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1726252..1738480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCK83_RS08275 cbpA 1726438..1727394 (-) 957 WP_005079294.1 DnaJ C-terminal domain-containing protein -
  CCK83_RS08280 - 1727541..1728152 (-) 612 WP_005079293.1 LysE family translocator -
  CCK83_RS08285 hslO 1728291..1729166 (-) 876 WP_005079292.1 Hsp33 family molecular chaperone HslO -
  CCK83_RS08290 kefB 1729331..1731175 (-) 1845 WP_005079290.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  CCK83_RS08295 priA 1731252..1733480 (-) 2229 WP_005079289.1 primosomal protein N' Machinery gene
  CCK83_RS08300 gspF 1733629..1734834 (+) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  CCK83_RS08305 gspG 1734858..1735442 (+) 585 WP_005079288.1 type II secretion system major pseudopilin GspG -
  CCK83_RS08310 - 1735709..1736053 (+) 345 WP_005079286.1 hypothetical protein -
  CCK83_RS08315 csaA 1736199..1736537 (+) 339 WP_005079284.1 tRNA-binding protein -
  CCK83_RS08320 lnt 1736539..1738098 (-) 1560 WP_005079282.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84038.76 Da        Isoelectric Point: 8.4603

>NTDB_id=230679 CCK83_RS08295 WP_005079289.1 1731252..1733480(-) (priA) [Acinetobacter pittii strain HUMV-6483]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERAHVGSRVAISFGRQNLIGIITEKVDPSESFTGTFQLKAISDLL
DEEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLQFLNEAAEHLRQIAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHASRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=230679 CCK83_RS08295 WP_005079289.1 1731252..1733480(-) (priA) [Acinetobacter pittii strain HUMV-6483]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTGCATCTGTACGATACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCTCACGTAGGCTCACGCGTCGCTATTTCATTTGGACGCCAAAATCTGA
TTGGCATCATTACTGAAAAAGTTGATCCAAGTGAATCATTTACAGGTACCTTTCAGCTTAAAGCCATTTCTGACCTTTTA
GATGAAGAACCAATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCAGCTCAGTATTACCAATTTCCAATTGGTGA
GGTCATGCAAACTGCCCTACCTGCATTATTGCGTCAAGGCAAACCAATGGATGTTTTGTTCCATCTTTGGAAAATCACAC
CATGTGATAATGTTGAAGCACTTCTTAAACGCTCTGTTAAACAACAAGATGCGTATCAAATTTTAAAGTTACACCCTGCC
GGAACTACAGAGAATATTCTTAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCACTTCAAAAGAAGGGACTAGTCGA
CTGTACGCTTGAACCGCACGACTTTAGCCCATCACCTGTTCAATTGGCACAAATGCCACTTACACTCAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCGTAAACGCACAGCATCAATACCAAGCTTTTTTGTTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAAGTGCTCAAGCAAGGTAAGCAAGTACTGGTATTAGTCCCAGAAATTGGTCT
AACCCCTCAAACGATTTCTCGTTTTAAGTCTCGTTTTAACTGTGATATTGCTCTATTGCACTCAGGCTTAAATGACTCCA
AACGCTTACAAGCATGGCAACAGGCTCAGACTGGCAAAGCATCTATTATTTTAGGAACCCGCTCAGCCATCTATACGCCA
CTGCCACGTTTGGGCTTAATCATTCTAGATGAAGAACATGACCTCTCTTATAAACAGCAAGAAGGTTTCCGTTACCATGC
ACGTGATGTCGCACTGTACCGAGGTCACTTACAAAACTGTCCAGTTATTTTAGGTTCAGCAACACCGAGCATCGATAGTT
ATTATTTGGTCGAAACTGGTAAATTAACTTCACTGCAACTTAACCAACGTGCAGGCCATGCGCTTTTGCCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAGCAACATGGAATTAGCCAACCTCTTATTGAGCAAATCAAGCATACGTTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTCTGTGAAAGTTGTGGGTGGCAAGCAA
ATTGTCCACATTGTGATGCACATTTTACGTTGCACACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGTACTGTT
CATCGCTTACCCGATCACTGCCCTGAATGTCAGCAAAAAAGCCTAAAAACCCTAGGTGCTGGAACAGCTAAGGTTGAAGA
GCACTTACAAGAACTATTTCCAGACTATGATGTGATTCGGGTTGACCGTGACAGCACCAGTCGTGTCGGTAGCTGGCAAA
AAATCTATGATCGGATTCATCAAAACAAACCAACAATTTTGCTTGGTACTCAAATGTTGGCAAAAGGTCACCATTTCCCA
CACGTGACTTTGGTTGCTATTTTAGATATTGATGCTGGGTTACTCAGCGTAGACATTCGTGCGCCAGAACGTACTGCACA
GTTAATTGTACAAGTCGCGGGTCGTGCAGGCCGTGGTGAACATAAAGGCCATGTTTATTTACAAACCCTAAGACCAGATC
ACCCTTTACTGACCACGCTCATCGAAAAAGATTATCGGGCGGTTGCCAAACAAACTCTTGCGGAACGTAAAGTCGCATTA
CTGCCGCCTTACCGTTATGCAGTACTGATACGTGCGGAATCCAAAGATCGTGACTATACCTTGCAATTTTTAAATGAAGC
GGCAGAACATTTACGCCAAATTGCGGGTGAAATTGTTGATATTTGGGGGCCAATTCCAGCCCCTATGGAGCGTAAAGCTG
GACGCTACCGCGCCCACATGGTGATTTTATCTGCTGACCGTGCTCGCCTCCATTTTTACTTAAGACAATGGTGGTCACAA
TTGGTTCATGCATCAAGGCAGCATCAACTTCGACTCTCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.709

100

0.977

Multiple sequence alignment