Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   CCK83_RS07265 Genome accession   NZ_CP021428
Coordinates   1516228..1517382 (-) Length   384 a.a.
NCBI ID   WP_005804748.1    Uniprot ID   A0A009MGU9
Organism   Acinetobacter pittii strain HUMV-6483     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1511228..1522382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCK83_RS07245 - 1512382..1513035 (+) 654 WP_079377716.1 TetR/AcrR family transcriptional regulator -
  CCK83_RS07250 - 1513140..1514060 (+) 921 WP_002114137.1 DMT family transporter -
  CCK83_RS07255 yrdC 1514453..1515022 (-) 570 WP_005804750.1 L-threonylcarbamoyladenylate synthase -
  CCK83_RS07260 dprA 1515074..1516207 (-) 1134 WP_005804749.1 DNA-processing protein DprA Machinery gene
  CCK83_RS07265 tsaP 1516228..1517382 (-) 1155 WP_005804748.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  CCK83_RS07270 def 1517505..1518035 (+) 531 WP_002114101.1 peptide deformylase -
  CCK83_RS07275 - 1518079..1518504 (+) 426 WP_005804747.1 DUF2946 family protein -
  CCK83_RS07280 oprC 1518577..1520691 (+) 2115 WP_068539947.1 TonB-dependent copper receptor -
  CCK83_RS07285 - 1520745..1520951 (+) 207 WP_005804745.1 hypothetical protein -
  CCK83_RS07290 - 1521019..1522233 (-) 1215 WP_017482416.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42641.54 Da        Isoelectric Point: 7.2977

>NTDB_id=230671 CCK83_RS07265 WP_005804748.1 1516228..1517382(-) (tsaP) [Acinetobacter pittii strain HUMV-6483]
MKKVFDGMVQFHALGIKKHLLALALFTGVAFSTVAETYAASPNHNPPSLKSNAPHVYVVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLDGRPLIGKDEGDGCVGIIRRYTGQMTNLQPQVRVESLNNNVPVIPLEHIKQWLE
HSTILPIDAIQHTPYVVGTADQRVLAAKGQTIYARGQGLIDGQRYAVYREGEPYYFTDNKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYNSEVRRGDRVMPEEEATLPTLFYPVDATQVTDGGKIIRVMGSIGTAAKNSVVTLDRGTAQGIQVGQ
VFDITQQGETIRDPKTKEPIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPVKVGSSIQPPRFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=230671 CCK83_RS07265 WP_005804748.1 1516228..1517382(-) (tsaP) [Acinetobacter pittii strain HUMV-6483]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTGGCACTTTTTAC
AGGGGTTGCATTCAGTACGGTAGCAGAGACTTATGCTGCTAGTCCGAACCATAATCCACCCTCTCTTAAAAGTAATGCAC
CACATGTCTACGTTGTAAAACGAGGAGATACGCTATGGGATATTTCCGGTCATTTTCTGAGTAAACCTTGGCGCTGGCCT
GAAATTTGGGCAAACAATCAGCATGTCAAAAATCCACACTGGATTTATCCTGGTGATCGATTACTGCTGTGTAGTTTAGA
TGGCCGCCCATTGATCGGTAAAGATGAGGGAGATGGCTGTGTCGGCATTATTCGCCGTTACACAGGCCAAATGACAAATT
TACAACCTCAAGTTCGTGTGGAGTCACTTAACAATAACGTACCTGTTATTCCCCTTGAACATATCAAACAATGGTTAGAA
CACAGCACTATTCTACCTATCGATGCAATTCAACACACTCCTTATGTAGTCGGTACTGCCGATCAACGTGTACTTGCAGC
AAAAGGTCAAACTATTTATGCGCGCGGACAAGGTTTAATTGATGGTCAACGTTACGCAGTTTATCGTGAAGGTGAACCTT
ATTATTTCACCGATAATAAAGGCAAAAAGCACAGTCTAGGTATTGAGCTACAACAAGTTGCCTCAGGGATTGCGATCTCT
TCTGAAAAAGACATTACCACGCTTGAGTTAACTGATAGCTACAATTCTGAAGTACGTCGTGGTGATCGGGTAATGCCAGA
AGAAGAAGCAACATTGCCTACTTTGTTTTATCCGGTAGATGCCACTCAGGTGACGGACGGCGGCAAAATTATTCGTGTAA
TGGGCTCAATTGGTACTGCTGCCAAAAATAGTGTGGTCACTTTAGATCGCGGTACGGCACAAGGTATTCAAGTAGGACAA
GTTTTTGATATTACGCAACAAGGTGAAACCATTCGAGATCCTAAAACCAAAGAACCAATACAGTTACCAGGACAACAAAT
TGGTAGTCTGATGGTCTTTAGAACTTTTGATCAGTTGAGTTATGCCTACGTATTAGAAAGCGATTTACCAGTTAAAGTTG
GTTCAAGCATCCAGCCACCCCGCTTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009MGU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

90.104

100

0.901

Multiple sequence alignment