Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   CCK83_RS03880 Genome accession   NZ_CP021428
Coordinates   821942..822826 (-) Length   294 a.a.
NCBI ID   WP_087400160.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUMV-6483     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 816942..827826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCK83_RS03865 miaB 818827..820278 (+) 1452 WP_087400158.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  CCK83_RS03870 phoL 820316..821404 (+) 1089 WP_002119513.1 PhoH family protein -
  CCK83_RS03875 ybeY 821414..821890 (+) 477 WP_002119528.1 rRNA maturation RNase YbeY -
  CCK83_RS03880 tonB2 821942..822826 (-) 885 WP_087400160.1 energy transducer TonB Machinery gene
  CCK83_RS03885 - 823059..823730 (+) 672 WP_068615277.1 hypothetical protein -
  CCK83_RS03890 - 823889..824602 (+) 714 WP_014207724.1 DUF3108 domain-containing protein -
  CCK83_RS03895 xpt 824675..825250 (+) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  CCK83_RS03900 wrbA 825304..825906 (-) 603 WP_213062789.1 NAD(P)H:quinone oxidoreductase -
  CCK83_RS03905 - 826268..827515 (+) 1248 WP_002119535.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33611.19 Da        Isoelectric Point: 7.2531

>NTDB_id=230652 CCK83_RS03880 WP_087400160.1 821942..822826(-) (tonB2) [Acinetobacter pittii strain HUMV-6483]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGAGA
FREAHRTSSDTPNPMLNDASTGDTELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=230652 CCK83_RS03880 WP_087400160.1 821942..822826(-) (tonB2) [Acinetobacter pittii strain HUMV-6483]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCTATGCCTAGCCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCATCAGGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGTGCGGGAGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATCAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAGCAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGCTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCCAATATGAAAGATATTTCGGAGTTGCGTATAGTACGTACTTGGCGTTTTGACCCGGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

89.116

100

0.891

Multiple sequence alignment