Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CV_RS14565 Genome accession   NC_005085
Coordinates   3251353..3252714 (-) Length   453 a.a.
NCBI ID   WP_011136521.1    Uniprot ID   Q7NTS9
Organism   Chromobacterium violaceum ATCC 12472     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3246353..3257714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV_RS14535 (CV2968) - 3247180..3248148 (+) 969 WP_052278846.1 hypothetical protein -
  CV_RS14540 (CV2969) - 3248177..3248968 (-) 792 WP_011136516.1 cystine ABC transporter substrate-binding protein -
  CV_RS14545 (CV2970) - 3249224..3249577 (+) 354 WP_011136517.1 DUF2325 domain-containing protein -
  CV_RS14550 (CV2971) - 3249623..3250528 (-) 906 WP_011136518.1 hypothetical protein -
  CV_RS14555 (CV2972) - 3250592..3250789 (-) 198 WP_011136519.1 zf-HC2 domain-containing protein -
  CV_RS14560 (CV2973) - 3250786..3251349 (-) 564 WP_011136520.1 sigma-70 family RNA polymerase sigma factor -
  CV_RS14565 (CV2974) radA 3251353..3252714 (-) 1362 WP_011136521.1 DNA repair protein RadA Machinery gene
  CV_RS14570 (CV2975) - 3252854..3253387 (-) 534 WP_011136522.1 hypothetical protein -
  CV_RS14575 (CV2976) - 3253402..3254163 (-) 762 WP_011136523.1 SDR family oxidoreductase -
  CV_RS14580 (CV2977) hpnE 3254160..3255431 (-) 1272 WP_043596389.1 hydroxysqualene dehydroxylase HpnE -
  CV_RS24120 (CV2978) hpnD 3255428..3256273 (-) 846 WP_043596390.1 presqualene diphosphate synthase HpnD -
  CV_RS14590 (CV2979) hpnC 3256344..3257156 (-) 813 WP_011136526.1 squalene synthase HpnC -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48803.09 Da        Isoelectric Point: 6.8128

>NTDB_id=23065 CV_RS14565 WP_011136521.1 3251353..3252714(-) (radA) [Chromobacterium violaceum ATCC 12472]
MAKNKTVFSCTECGGQSPKWQGQCPHCSAWNTLVEAVAAPAAASPRFQSWAANVTKVQKLSEVQTEETPRDPSGIDELDR
VLGGGIVRGAVVLIGGDPGIGKSTLLLQALSQIGRSRKVLYVSGEESAQQIALRASRLALDTSSVDLLAEICIENILETL
KREQPEVVVIDSIQTLYTEQVTSAPGSVSQVRECAAQLTRMAKQSGITVLLVGHVTKEGSLAGPRVLEHMVDTVLYFEGD
SHSSYRMIRAIKNRFGAVNELGVFAMTDRGLKGVSNPSAIFLSSYRDDVAGSCVLVTQEGTRPLLVEIQALVDDCHGFQP
KRLTVGLEQNRLSMLLAVLHRHGGVACFDQDVFLNAVGGVKINEPAADLAIILAMVSSLRNKALPEKLVVFGEVGLAGEV
RPVTRGQERLKEAAKLGFTRAIVPTANKPRQEIEGLKVLAVDRLDQAVEYCRE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=23065 CV_RS14565 WP_011136521.1 3251353..3252714(-) (radA) [Chromobacterium violaceum ATCC 12472]
ATGGCCAAGAACAAAACCGTATTCAGCTGCACCGAGTGCGGCGGACAGTCGCCCAAGTGGCAGGGCCAGTGCCCGCACTG
CAGCGCCTGGAACACGCTGGTGGAGGCGGTGGCCGCGCCGGCCGCCGCCAGTCCCCGCTTCCAGTCCTGGGCGGCCAACG
TCACCAAGGTGCAGAAACTGTCCGAGGTGCAGACCGAGGAAACCCCGCGCGATCCGTCCGGCATCGACGAACTGGACCGC
GTGCTGGGCGGCGGCATCGTGCGCGGCGCGGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCCACGCTGCTGCT
GCAGGCCTTGTCTCAGATCGGCCGCAGCCGCAAGGTGCTCTACGTTTCCGGCGAGGAATCGGCGCAGCAGATCGCCTTGC
GCGCCTCGCGACTGGCGCTGGATACCAGCAGCGTCGATCTGCTGGCCGAGATCTGCATCGAGAACATTCTGGAAACGCTG
AAGCGAGAGCAGCCGGAAGTGGTGGTGATCGACTCGATCCAGACGCTTTACACCGAGCAGGTGACGTCGGCGCCGGGCTC
GGTGTCGCAGGTGCGCGAGTGCGCGGCGCAGCTGACGCGGATGGCCAAGCAGAGCGGCATCACCGTGTTGCTGGTCGGCC
ATGTGACCAAGGAAGGTTCGCTGGCCGGTCCGCGCGTGCTGGAGCACATGGTGGACACCGTGCTGTATTTCGAGGGCGAC
TCCCACTCCAGCTACCGGATGATACGCGCGATCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCGATGAC
CGACCGCGGCCTGAAGGGCGTGTCCAATCCGTCGGCCATCTTCCTTTCCTCGTATCGCGACGACGTCGCCGGCTCCTGCG
TGCTGGTGACGCAGGAAGGCACGCGGCCGCTGCTGGTGGAAATCCAGGCCTTGGTCGACGACTGCCACGGCTTCCAGCCC
AAGCGTCTCACCGTCGGCCTGGAGCAGAACCGTCTGTCCATGCTGCTGGCGGTGCTGCACCGCCACGGCGGCGTCGCCTG
TTTCGACCAGGACGTGTTCCTCAACGCGGTGGGCGGCGTCAAGATCAACGAGCCGGCCGCCGACCTCGCCATCATCCTGG
CCATGGTTTCGTCGCTGCGCAACAAGGCGCTGCCGGAAAAGCTGGTGGTGTTCGGCGAGGTGGGCCTGGCCGGCGAGGTG
CGGCCGGTGACGCGCGGCCAGGAACGCTTGAAGGAGGCGGCCAAGCTGGGCTTCACCCGCGCCATCGTGCCCACCGCCAA
CAAGCCGCGGCAGGAAATCGAGGGCCTGAAGGTCTTGGCCGTGGACCGCCTGGATCAGGCGGTGGAATACTGCAGGGAGT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7NTS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.658

100

0.51
  radA Streptococcus mitis NCTC 12261

48.23

99.779

0.481
  radA Streptococcus mitis SK321

48.23

99.779

0.481
  radA Streptococcus pneumoniae Rx1

50

93.598

0.468
  radA Streptococcus pneumoniae D39

50

93.598

0.468
  radA Streptococcus pneumoniae R6

50

93.598

0.468
  radA Streptococcus pneumoniae TIGR4

50

93.598

0.468

Multiple sequence alignment