Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CSC06_RS22000 Genome accession   NZ_CP027140
Coordinates   3881480..3882907 (-) Length   475 a.a.
NCBI ID   WP_000980620.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0369     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3876480..3887907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC06_RS21970 (CSC06_3887) yeeZ 3876535..3877359 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  CSC06_RS21975 (CSC06_3888) yeeY 3877405..3878334 (+) 930 WP_047091647.1 LysR substrate-binding domain-containing protein -
  CSC06_RS21980 yoeI 3878549..3878611 (+) 63 WP_010723108.1 membrane protein YoeI -
  CSC06_RS21985 (CSC06_3889) plaP 3878601..3879959 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CSC06_RS21990 (CSC06_3890) tsuA 3880138..3881196 (+) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  CSC06_RS21995 (CSC06_3891) tsuB 3881210..3881437 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CSC06_RS22000 (CSC06_3892) sbcB 3881480..3882907 (-) 1428 WP_000980620.1 exodeoxyribonuclease I Machinery gene
  CSC06_RS22005 (CSC06_3893) dacD 3883116..3884282 (+) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CSC06_RS22010 (CSC06_3894) sbmC 3884401..3884874 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  CSC06_RS22015 (CSC06_3895) yeeA 3885073..3886131 (+) 1059 WP_001200891.1 FUSC family protein -
  CSC06_RS22020 (CSC06_3897) tmaR 3886303..3886632 (+) 330 WP_000450409.1 DUF496 family protein -
  CSC06_RS22025 - 3886733..3886924 (-) 192 Protein_3676 EutP/PduV family microcompartment system protein -
  CSC06_RS22030 (CSC06_3899) cobU 3887091..3887636 (+) 546 WP_000973155.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4740

>NTDB_id=230548 CSC06_RS22000 WP_000980620.1 3881480..3882907(-) (sbcB) [Escherichia coli strain AR_0369]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=230548 CSC06_RS22000 WP_000980620.1 3881480..3882907(-) (sbcB) [Escherichia coli strain AR_0369]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577

Multiple sequence alignment