Detailed information NTG0230534

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CSC06_RS18020
• Genome accession: NZ_CP027140
• Coordinates: 3095653..3096645 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0369
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3090653..3101645

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSC06_RS17990 (CSC06_3112)	ispD	3090714..3091424 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CSC06_RS17995 (CSC06_3113)	ispF	3091424..3091903 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CSC06_RS18000 (CSC06_3114)	truD	3091900..3092949 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CSC06_RS18005 (CSC06_3115)	surE	3092930..3093691 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CSC06_RS18010 (CSC06_3116)	pcm	3093685..3094311 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CSC06_RS18015 (CSC06_3117)	nlpD	3094496..3095590 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CSC06_RS18020 (CSC06_3118)	rpoS	3095653..3096645 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CSC06_RS18025 (CSC06_3119)	ygbN	3096739..3098103 (-)	1365	WP_000104459.1	GntP family transporter	-
CSC06_RS18030 (CSC06_3120)	ygbM	3098192..3098968 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
CSC06_RS18035 (CSC06_3121)	ygbL	3098973..3099611 (-)	639	WP_001278994.1	aldolase	-
CSC06_RS18040 (CSC06_3122)	otnK	3099608..3100870 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=230534 CSC06_RS18020 WP_000081550.1 3095653..3096645(+) (rpoS) [Escherichia coli strain AR_0369]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=230534 CSC06_RS18020 WP_000081550.1 3095653..3096645(+) (rpoS) [Escherichia coli strain AR_0369]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715