Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CSC09_RS22015 Genome accession   NZ_CP027134
Coordinates   3919998..3920513 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain AR_0372     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3914998..3925513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC09_RS21990 (CSC09_3853) ygaZ 3915397..3916134 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CSC09_RS21995 (CSC09_3854) ygaH 3916124..3916459 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CSC09_RS22000 (CSC09_3855) emrR 3916550..3917080 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CSC09_RS22005 (CSC09_3857) emrA 3917207..3918379 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CSC09_RS22010 (CSC09_3858) emrB 3918396..3919934 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CSC09_RS22015 (CSC09_3859) luxS 3919998..3920513 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CSC09_RS22020 (CSC09_3860) gshA 3920663..3922219 (-) 1557 WP_001521120.1 glutamate--cysteine ligase -
  CSC09_RS22025 (CSC09_3861) yqaA 3922292..3922720 (-) 429 WP_001287454.1 YqaA family protein -
  CSC09_RS22030 (CSC09_3862) yqaB 3922717..3923283 (-) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CSC09_RS22065 (CSC09_3869) csrA 3924714..3924899 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=230445 CSC09_RS22015 WP_001130211.1 3919998..3920513(-) (luxS) [Escherichia coli strain AR_0372]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=230445 CSC09_RS22015 WP_001130211.1 3919998..3920513(-) (luxS) [Escherichia coli strain AR_0372]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment