Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CBR68_RS08340 Genome accession   NZ_CP021395
Coordinates   1730706..1732142 (+) Length   478 a.a.
NCBI ID   WP_080666485.1    Uniprot ID   -
Organism   Bordetella hinzii strain SV2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1725706..1737142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBR68_RS08325 (CBR68_08305) - 1726555..1727844 (+) 1290 WP_029577799.1 amidase -
  CBR68_RS08330 (CBR68_08310) leuA 1727933..1729642 (-) 1710 WP_029577798.1 2-isopropylmalate synthase -
  CBR68_RS08335 (CBR68_08315) - 1730018..1730707 (-) 690 WP_029577797.1 hypothetical protein -
  CBR68_RS08340 (CBR68_08320) rpoN/rpoN1 1730706..1732142 (+) 1437 WP_080666485.1 RNA polymerase factor sigma-54 Machinery gene
  CBR68_RS08345 (CBR68_08325) - 1732263..1732541 (+) 279 WP_029577795.1 bacterioferritin-associated ferredoxin -
  CBR68_RS08350 (CBR68_08330) - 1732603..1733472 (-) 870 WP_048940413.1 LysR substrate-binding domain-containing protein -
  CBR68_RS08355 (CBR68_08335) - 1733580..1734491 (+) 912 WP_029577793.1 DMT family transporter -
  CBR68_RS08360 (CBR68_08340) bfr 1734805..1735281 (+) 477 WP_029577792.1 bacterioferritin -
  CBR68_RS08365 (CBR68_08345) - 1735344..1736027 (-) 684 WP_029577791.1 hypothetical protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 52715.12 Da        Isoelectric Point: 4.9223

>NTDB_id=230420 CBR68_RS08340 WP_080666485.1 1730706..1732142(+) (rpoN/rpoN1) [Bordetella hinzii strain SV2]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAEISQALAENPLLERDESPADQVDSDPQREASVDHEDAA
PDTELRFDEMPGSGGVYPDDDIDTPARDDTLREHLLLQLSLTRAAPRDAALATLLIDELDDNGYLGSPLDEILQWLPPEL
EVEEDELRAALSLLQSFDPPGIGARDMAECLLLQLRQPDIGRLPEAAQPAVLACARQICMQHLALLATGNPARLREILRV
DEATLRAARALIVRLEPRPGRAWTAPAADYAVPDVLVRKTRQGWQAVLNSAVMPRLQINGLYAQMLSNQREAAYAGLNAQ
LQQARWMIRNVEQRFDTILRVAQAIVAHQAEFFSRGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLELKRF
FGTGVATDSGDSASATAVQAHIRQMVAEENRARPLSDSQIMERLASQGIVIARRTVAKYREALRIAPAAVRKAQAAAR

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=230420 CBR68_RS08340 WP_080666485.1 1730706..1732142(+) (rpoN/rpoN1) [Bordetella hinzii strain SV2]
ATGCAAAATATTGTACCTATGACTCGTCCCGCCTTAGAACTTCGGCCCGGTCAGCATTTGACCCTGACCCCGCAGCTGCA
ACAGTCCATCCGGCTGCTGCAGCTCTCTTCGCTGGAGCTGGAGGCGGAAATCTCCCAGGCCCTGGCTGAAAATCCGTTGT
TGGAACGCGACGAAAGTCCGGCCGACCAGGTCGACAGCGACCCCCAGCGCGAAGCCAGCGTCGACCATGAGGACGCCGCC
CCGGACACCGAATTGCGCTTTGACGAGATGCCGGGCTCGGGCGGCGTCTATCCGGACGACGACATCGATACACCGGCGCG
CGATGACACGTTGCGCGAGCACCTGCTGCTGCAGCTGAGCCTGACGCGCGCCGCCCCGCGCGATGCCGCCCTGGCCACGC
TGCTCATCGACGAGCTGGATGACAACGGCTACCTGGGCTCGCCGCTCGACGAAATCCTGCAATGGCTGCCGCCCGAACTG
GAGGTCGAGGAGGACGAGCTGCGCGCGGCCTTGAGCCTGCTGCAATCCTTCGATCCGCCGGGCATCGGCGCGCGCGACAT
GGCCGAGTGCCTGCTCCTGCAGTTGCGCCAGCCTGATATCGGGCGCCTGCCCGAGGCCGCCCAGCCCGCGGTACTGGCCT
GTGCGCGGCAGATCTGCATGCAGCACCTGGCGCTGCTGGCCACCGGCAATCCGGCGCGGCTGCGCGAGATATTGCGGGTC
GACGAGGCCACGCTGCGCGCGGCGCGCGCGCTCATCGTGCGGCTGGAACCCCGCCCCGGCCGCGCCTGGACCGCGCCGGC
CGCGGACTATGCCGTGCCCGATGTGTTGGTGCGCAAGACCCGGCAGGGCTGGCAGGCCGTGCTCAACAGCGCGGTGATGC
CGCGCCTGCAGATCAACGGCCTGTATGCCCAGATGCTGTCCAACCAGCGCGAGGCGGCCTACGCAGGCCTGAATGCCCAG
CTGCAGCAGGCGCGCTGGATGATACGCAACGTCGAGCAGCGTTTTGACACCATCCTGCGGGTGGCCCAGGCCATCGTCGC
GCACCAGGCGGAGTTCTTCAGCCGCGGGCCCGCCGCCATGCGGCCGCTGATCCTCAAGGACATCGCGGGCGAGCTCGGCC
TGCACGAATCCACGATTTCGCGCGCCACGACGCAGAAGTACATGCTCACTCCGTTCGGCACGCTGGAGCTCAAGCGGTTT
TTCGGCACGGGCGTGGCGACCGATAGCGGCGACTCCGCCTCGGCCACGGCGGTGCAGGCCCATATCCGGCAGATGGTGGC
CGAGGAAAATCGGGCCAGGCCCCTGTCCGATAGCCAGATCATGGAGCGCCTGGCCAGCCAAGGCATCGTGATCGCCCGCC
GCACCGTGGCCAAGTACCGCGAGGCCCTGCGTATCGCCCCGGCCGCCGTGCGCAAGGCCCAGGCCGCGGCGCGCTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-472)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(106-302)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.198

100

0.531

Multiple sequence alignment