Detailed information NTG0230381

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CSC11_RS21625
• Genome accession: NZ_CP027126
• Coordinates: 4136186..4137178 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0374
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4131186..4142178

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSC11_RS21595 (CSC11_4064)	ispD	4131247..4131957 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CSC11_RS21600 (CSC11_4065)	ispF	4131957..4132436 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CSC11_RS21605 (CSC11_4066)	truD	4132433..4133482 (+)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
CSC11_RS21610 (CSC11_4067)	surE	4133463..4134224 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CSC11_RS21615 (CSC11_4068)	pcm	4134218..4134844 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CSC11_RS21620 (CSC11_4069)	nlpD	4135029..4136123 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CSC11_RS21625 (CSC11_4070)	rpoS	4136186..4137178 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CSC11_RS21630 (CSC11_4071)	-	4137299..4137706 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
CSC11_RS21635 (CSC11_4072)	-	4137853..4138446 (+)	594	WP_106087051.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CSC11_RS21640 (CSC11_4073)	-	4138446..4139873 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CSC11_RS21645 (CSC11_4074)	-	4139884..4140120 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CSC11_RS21650 (CSC11_4075)	ygbN	4140159..4141523 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=230381 CSC11_RS21625 WP_000081550.1 4136186..4137178(+) (rpoS) [Escherichia coli strain AR_0374]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=230381 CSC11_RS21625 WP_000081550.1 4136186..4137178(+) (rpoS) [Escherichia coli strain AR_0374]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715