Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CBR65_RS19290 Genome accession   NZ_CP021382
Coordinates   4624726..4626096 (+) Length   456 a.a.
NCBI ID   WP_087468364.1    Uniprot ID   A0A1Y0G1W3
Organism   Cellvibrio sp. PSBB006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4619726..4631096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBR65_RS19270 (CBR65_19245) parE 4620411..4622300 (+) 1890 WP_087468360.1 DNA topoisomerase IV subunit B -
  CBR65_RS19275 (CBR65_19250) - 4622463..4622843 (+) 381 WP_087468361.1 hypothetical protein -
  CBR65_RS19280 (CBR65_19255) - 4622840..4623445 (+) 606 WP_087468362.1 hypothetical protein -
  CBR65_RS19285 (CBR65_19260) - 4623543..4624463 (+) 921 WP_087468363.1 hypothetical protein -
  CBR65_RS19290 (CBR65_19265) radA 4624726..4626096 (+) 1371 WP_087468364.1 DNA repair protein RadA Machinery gene
  CBR65_RS19295 (CBR65_19270) - 4626121..4628589 (-) 2469 WP_087468365.1 NAD-dependent epimerase/dehydratase family protein -
  CBR65_RS19300 (CBR65_19275) - 4628791..4629894 (-) 1104 WP_087468366.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48786.01 Da        Isoelectric Point: 6.3946

>NTDB_id=230332 CBR65_RS19290 WP_087468364.1 4624726..4626096(+) (radA) [Cellvibrio sp. PSBB006]
MATKTKSAFVCNDCGAEYSKWQGQCTECGVWNSLSEVRLGPTPSNRSAKFQGYAGAAAGGNVQTLAEISLTDLPRFSSGT
GEFDRVLGGGFVPGSVVLIGGNPGAGKSTLLLQTLCSLARTMSALYITGEESLQQVAMRAQRLGLPTDKLQMLSETSVET
ICATAQKVAPKVMVIDSIQVMHMEDITSAPGSVSQVRESAAYLTRFAKQTGTVLILVGHVTKDGSLAGPKVLEHMIDCSI
LLEGDNDSRFRTLRGNKNRFGAVNELGVFAMTEQGMREVNNPSAIFLQRAEDVSSGSVVMVMWEGTRPLLIEIQALVDDS
HLGNPRRVAVGMDQNRLSMLLAVLHRHGGIMVGDQDVFVNVVGGVRVMETSADLAVLVAIVSSFRDRALPEDLMVFGEVG
LSGEIRPVPSGQERLREAAKHGFKKAIVPYANAPREKNPGIEVIAVKNLQEALDAL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=230332 CBR65_RS19290 WP_087468364.1 4624726..4626096(+) (radA) [Cellvibrio sp. PSBB006]
GTGGCAACGAAAACCAAAAGTGCATTTGTGTGTAACGATTGCGGTGCTGAATACAGCAAATGGCAGGGCCAGTGTACGGA
ATGCGGTGTGTGGAATAGTCTATCGGAAGTGCGGTTGGGACCAACTCCGAGTAATCGTTCTGCCAAGTTCCAGGGTTACG
CCGGCGCAGCGGCTGGTGGCAATGTGCAGACGTTGGCGGAAATCAGTTTGACTGATCTGCCACGTTTCAGCAGTGGTACT
GGTGAATTTGATCGCGTATTGGGTGGCGGTTTTGTACCTGGATCGGTGGTGTTAATCGGTGGGAATCCTGGTGCTGGCAA
GTCGACTTTATTGCTGCAAACACTGTGCAGCCTCGCGCGGACTATGTCCGCACTTTACATCACTGGCGAAGAATCGCTTC
AACAAGTAGCCATGCGCGCCCAGCGTCTCGGTTTGCCCACTGACAAATTACAAATGCTCAGCGAAACCAGTGTGGAAACC
ATTTGCGCGACTGCGCAAAAAGTCGCGCCCAAGGTGATGGTGATCGATTCGATCCAGGTAATGCATATGGAAGATATTAC
TTCCGCACCTGGCTCGGTGTCGCAAGTGCGCGAGAGCGCGGCTTATCTCACACGCTTTGCGAAACAAACCGGCACTGTGT
TGATTCTCGTGGGGCACGTAACCAAAGATGGTTCGCTGGCCGGTCCGAAAGTATTGGAGCACATGATCGACTGTTCGATA
TTGCTAGAGGGCGACAACGATTCGCGCTTCAGGACTTTACGCGGTAATAAAAATCGTTTTGGTGCCGTGAATGAACTGGG
TGTATTTGCCATGACCGAACAGGGCATGCGCGAAGTGAATAATCCCTCGGCGATTTTTTTGCAGCGCGCGGAGGATGTGT
CATCCGGTTCGGTAGTGATGGTGATGTGGGAAGGTACTCGCCCGCTGCTAATAGAAATCCAGGCGTTGGTGGATGACAGT
CATCTTGGTAATCCGCGCCGTGTGGCGGTGGGGATGGATCAAAATCGGTTGTCCATGTTGCTAGCCGTTTTGCATCGCCA
CGGCGGCATTATGGTTGGCGATCAGGATGTATTTGTGAATGTGGTCGGCGGTGTGCGGGTGATGGAAACCAGTGCGGACC
TCGCCGTGTTGGTGGCGATTGTTTCCAGCTTTCGCGACCGCGCCTTGCCGGAAGACCTGATGGTGTTTGGTGAGGTCGGT
CTCTCTGGTGAAATTCGTCCGGTGCCGAGTGGTCAGGAGCGTCTGCGCGAGGCGGCAAAGCACGGTTTTAAAAAAGCCAT
TGTGCCTTACGCCAACGCCCCGCGCGAAAAAAATCCCGGCATTGAAGTCATTGCCGTTAAAAATTTACAGGAAGCTCTGG
ACGCGTTGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0G1W3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.237

100

0.496
  radA Streptococcus pneumoniae Rx1

42.919

100

0.432
  radA Streptococcus pneumoniae D39

42.919

100

0.432
  radA Streptococcus pneumoniae TIGR4

42.919

100

0.432
  radA Streptococcus pneumoniae R6

42.919

100

0.432
  radA Streptococcus mitis NCTC 12261

42.702

100

0.43
  radA Streptococcus mitis SK321

43.077

99.781

0.43

Multiple sequence alignment