Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CSC11_RS00320 Genome accession   NZ_CP027126
Coordinates   1347..2774 (-) Length   475 a.a.
NCBI ID   WP_000980605.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0374     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..7774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC11_RS00310 (CSC11_0002) tsuA 5..1063 (+) 1059 WP_000492330.1 thiosulfate utilization transporter TsuA/YeeE -
  CSC11_RS00315 (CSC11_0003) tsuB 1077..1304 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CSC11_RS00320 (CSC11_0004) sbcB 1347..2774 (-) 1428 WP_000980605.1 exodeoxyribonuclease I Machinery gene
  CSC11_RS00325 (CSC11_0005) dacD 2983..4149 (+) 1167 WP_001446926.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CSC11_RS00330 sbmC 4268..4740 (+) 473 Protein_4 DNA gyrase inhibitor SbmC -
  CSC11_RS00335 (CSC11_0008) yeeA 4938..5996 (+) 1059 WP_001200890.1 FUSC family protein -
  CSC11_RS00340 (CSC11_0010) tmaR 6168..6497 (+) 330 WP_000450409.1 DUF496 family protein -
  CSC11_RS00345 - 6598..6780 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CSC11_RS00350 - 6834..6980 (+) 147 Protein_8 transposase domain-containing protein -
  CSC11_RS00355 (CSC11_0011) - 7269..7349 (-) 81 Protein_9 hypothetical protein -
  CSC11_RS00360 (CSC11_0012) yeeW 7395..7589 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.69 Da        Isoelectric Point: 5.3480

>NTDB_id=230313 CSC11_RS00320 WP_000980605.1 1347..2774(-) (sbcB) [Escherichia coli strain AR_0374]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
NRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=230313 CSC11_RS00320 WP_000980605.1 1347..2774(-) (sbcB) [Escherichia coli strain AR_0374]
ATGATGAATGACGGTAAGCAACAATCTACGTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
AACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAGAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579