Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CBP36_RS17705 Genome accession   NZ_CP021366
Coordinates   3808637..3810226 (-) Length   529 a.a.
NCBI ID   WP_086928352.1    Uniprot ID   A0A240UFY3
Organism   Acidovorax carolinensis strain P4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3803637..3815226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBP36_RS17685 (CBP36_17680) - 3805354..3806193 (-) 840 WP_086928348.1 UPF0149 family protein -
  CBP36_RS17690 (CBP36_17685) - 3806287..3806829 (-) 543 WP_086928349.1 putative toxin-antitoxin system toxin component, PIN family -
  CBP36_RS17695 (CBP36_17690) - 3806819..3808111 (-) 1293 WP_086928350.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  CBP36_RS17700 (CBP36_17695) - 3808135..3808566 (-) 432 WP_086928351.1 acyl-CoA thioesterase -
  CBP36_RS17705 (CBP36_17700) rpoN/rpoN1 3808637..3810226 (-) 1590 WP_086928352.1 RNA polymerase factor sigma-54 Machinery gene
  CBP36_RS17710 (CBP36_17705) lptB 3810226..3810999 (-) 774 WP_236748716.1 LPS export ABC transporter ATP-binding protein -
  CBP36_RS17715 (CBP36_17710) lptA 3811011..3811664 (-) 654 WP_086928861.1 lipopolysaccharide transport periplasmic protein LptA -
  CBP36_RS17720 (CBP36_17715) - 3811764..3812420 (-) 657 WP_086913638.1 thiol:disulfide interchange protein DsbA/DsbL -
  CBP36_RS17725 (CBP36_17720) - 3812505..3813155 (-) 651 WP_086928353.1 SPOR domain-containing protein -
  CBP36_RS17730 (CBP36_17725) argS 3813168..3814877 (-) 1710 WP_086928354.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58237.32 Da        Isoelectric Point: 4.7123

>NTDB_id=230216 CBP36_RS17705 WP_086928352.1 3808637..3810226(-) (rpoN/rpoN1) [Acidovorax carolinensis strain P4]
MKPGLSLRVSQHLSLTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAPREEFGLEAADTPAQADDYSADDAMY
SGAAGASSTSAEGQNDAETPSASADEPDWSGDGTVEMAPNDAEWGGDAPARNRNDSDGDEADATELARSHESLTSFLHRQ
ALALRLSEIDRAALRFLIESLNDDGYLEEPLEELATGLAGEGNLEQIDELVHRFTVAQRLLQSLEPVGVGARNLAECLTL
QLTALAADEDSAIDPDTVQTALRICQQPLEMLARRDIRRLTQLCGDGEERTRAAMALIARLEPRPGRRFADVERNIIVPD
VIVRKAGRANGRDGQHNFIVQLNPDVMPRLRVHDIYAGALRGHKGGEGHQGMQQRLQEARWFIKNIQQRFDTILRVSRAI
VERQKNFFTHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPIGTYELKYFFGSGLGTETGGNASSTAVRALIKQF
VAAENPAKPLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=230216 CBP36_RS17705 WP_086928352.1 3808637..3810226(-) (rpoN/rpoN1) [Acidovorax carolinensis strain P4]
ATGAAACCGGGTCTTTCGCTGCGCGTTTCGCAGCACCTGTCGCTCACGCCGCAGTTGCAGCAATCCATCCGGCTGTTGCA
GCTGTCGACGCTGGAGCTGTCGCAGGAAGTCGAGCAGATGCTCGACGAGAACCCGTTTCTGGAGCGCACCGCCGAAGAAG
CGCCGCGCGAGGAATTTGGCCTGGAGGCGGCCGACACCCCCGCGCAGGCCGACGACTACAGCGCCGATGACGCTATGTAT
TCAGGAGCTGCTGGCGCAAGCAGTACAAGCGCTGAGGGCCAAAATGATGCTGAAACCCCCAGCGCCAGCGCGGATGAGCC
CGACTGGAGCGGCGACGGCACCGTGGAAATGGCGCCTAACGATGCCGAGTGGGGTGGCGATGCCCCCGCCCGCAACCGCA
ACGACTCCGACGGCGACGAGGCCGATGCCACCGAGCTGGCGCGCTCGCACGAGTCGCTCACGTCCTTTCTGCATCGCCAG
GCCCTGGCGCTGCGCCTGTCCGAGATCGACCGCGCCGCGTTGCGTTTTCTGATCGAATCGCTGAACGACGATGGCTACCT
CGAAGAACCACTTGAAGAGCTGGCTACGGGCCTGGCCGGCGAGGGCAACCTGGAGCAGATCGACGAGCTGGTGCACCGTT
TCACCGTGGCGCAACGCCTGCTGCAAAGCCTGGAGCCCGTGGGCGTGGGCGCGCGCAACCTGGCCGAATGCCTGACGCTG
CAGCTGACCGCCCTGGCCGCCGACGAAGACAGCGCGATTGACCCCGACACCGTGCAGACCGCGCTGCGCATCTGCCAGCA
GCCGCTGGAGATGCTGGCGCGCCGCGACATCCGCCGCCTGACGCAGCTGTGTGGCGATGGCGAGGAGCGCACCCGCGCCG
CCATGGCGCTGATTGCCCGCCTGGAGCCGCGCCCCGGCCGCCGCTTTGCCGATGTCGAGCGCAACATCATCGTGCCCGAC
GTCATCGTGCGCAAGGCGGGCCGTGCCAACGGCCGCGATGGCCAGCACAACTTCATCGTTCAGCTCAATCCCGATGTGAT
GCCGCGCCTGCGCGTGCACGACATCTACGCCGGGGCGCTGCGCGGTCACAAGGGCGGCGAGGGCCACCAGGGCATGCAGC
AGCGCCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTTGACACCATCCTGCGCGTCTCGCGCGCCATC
GTCGAGCGGCAAAAGAATTTCTTCACCCATGGCGAACTGGCCATGCGCCCGCTGGTGCTGCGCGACATCGCCGACGAGCT
GGGCCTGCACGAGTCCACCATCAGCCGCGTGACCACCGCCAAGTACATGGCCACGCCGATCGGCACCTATGAGCTCAAAT
ACTTCTTTGGCTCGGGCTTGGGCACCGAAACCGGTGGCAATGCCTCCAGCACGGCGGTGCGTGCGCTGATCAAGCAGTTT
GTCGCCGCTGAAAACCCCGCCAAGCCGCTGTCCGACAGCCAGATCGCCGAGATGCTCAAGGAGCAGGGCATCGAGTGCGC
GCGCCGCACGGTGGCCAAGTACCGCGAGGCGCTCAAGATCGCGCCCGCCAACCTGCGCAAGGCGCTCTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(144-356)

Sigma-54, DNA binding domain (Sigma54_DBD)

(372-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240UFY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.271

100

0.539

Multiple sequence alignment