Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CBP36_RS04155 Genome accession   NZ_CP021366
Coordinates   886462..886860 (+) Length   132 a.a.
NCBI ID   WP_086911440.1    Uniprot ID   -
Organism   Acidovorax carolinensis strain P4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 881462..891860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBP36_RS04135 (CBP36_04130) - 881969..883714 (-) 1746 WP_236748666.1 alkaline phosphatase D family protein -
  CBP36_RS04140 (CBP36_04135) hemL 883890..885200 (-) 1311 WP_086926665.1 glutamate-1-semialdehyde 2,1-aminomutase -
  CBP36_RS04145 (CBP36_04140) thiD 885184..886134 (-) 951 WP_086926666.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CBP36_RS04150 (CBP36_04145) - 886229..886402 (+) 174 WP_086911439.1 rubredoxin -
  CBP36_RS04155 (CBP36_04150) pilG 886462..886860 (+) 399 WP_086911440.1 response regulator Regulator
  CBP36_RS04160 (CBP36_04155) - 886860..887225 (+) 366 WP_086911441.1 response regulator -
  CBP36_RS04165 (CBP36_04160) - 887241..887768 (+) 528 WP_086926667.1 chemotaxis protein CheW -
  CBP36_RS04170 (CBP36_04165) - 887790..890078 (+) 2289 WP_086926668.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14626.82 Da        Isoelectric Point: 6.9234

>NTDB_id=230205 CBP36_RS04155 WP_086911440.1 886462..886860(+) (pilG) [Acidovorax carolinensis strain P4]
MTTTGATFKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALAKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
DTPVVMLSSKDGVFDKARGRMVGCQEYLTKPFTKDQLLQAVQQFGNSQQGAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=230205 CBP36_RS04155 WP_086911440.1 886462..886860(+) (pilG) [Acidovorax carolinensis strain P4]
TTGACTACAACAGGCGCAACTTTCAAAGTGCTCGTGGTGGATGACAGCAATACCATTCGCCGAAGCGCCGAGATTTTTCT
CAAGCAGGGAGGGCACGAGGTCCTGCTGGCAGATGATGGTTTTGATGCCTTGGCCAAGGTGAATGACTACCAACCGCAGC
TTATTTTCTGCGACATCCTGATGCCCAAGCTTGACGGGTATCAAACCTGCGCCATCATCAAGCGCAATGCCCGTTTTGCC
GATACTCCGGTGGTGATGCTGTCTTCCAAGGATGGAGTGTTTGACAAAGCGCGCGGCCGCATGGTCGGCTGTCAGGAATA
TCTCACCAAACCTTTTACCAAAGACCAGTTGTTGCAGGCGGTGCAGCAATTTGGCAATTCCCAACAAGGAGCCATGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

56.198

91.667

0.515

Multiple sequence alignment