Detailed information NTG0230180

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CYQ10_RS05340
• Genome accession: NZ_CP027118
• Coordinates: 1027697..1028689 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 26561
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1022697..1033689

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CYQ10_RS05310 (CYQ10_05310)	ispD	1022758..1023468 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CYQ10_RS05315 (CYQ10_05315)	ispF	1023468..1023947 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CYQ10_RS05320 (CYQ10_05320)	truD	1023944..1024993 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CYQ10_RS05325 (CYQ10_05325)	surE	1024974..1025735 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CYQ10_RS05330 (CYQ10_05330)	pcm	1025729..1026355 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CYQ10_RS05335 (CYQ10_05335)	nlpD	1026540..1027634 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CYQ10_RS05340 (CYQ10_05340)	rpoS	1027697..1028689 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CYQ10_RS05345 (CYQ10_05345)	ygbN	1028783..1030147 (-)	1365	WP_000104441.1	GntP family transporter	-
CYQ10_RS05350 (CYQ10_05350)	ygbM	1030236..1031012 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
CYQ10_RS05355 (CYQ10_05355)	ygbL	1031017..1031655 (-)	639	WP_001278994.1	aldolase	-
CYQ10_RS05360 (CYQ10_05360)	otnK	1031652..1032914 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=230180 CYQ10_RS05340 WP_000081550.1 1027697..1028689(+) (rpoS) [Escherichia coli strain 26561]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=230180 CYQ10_RS05340 WP_000081550.1 1027697..1028689(+) (rpoS) [Escherichia coli strain 26561]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715