Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CBP33_RS03730 Genome accession   NZ_CP021359
Coordinates   788957..789355 (+) Length   132 a.a.
NCBI ID   WP_086911440.1    Uniprot ID   -
Organism   Acidovorax carolinensis strain NA2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 783957..794355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBP33_RS03710 (CBP33_03710) - 784465..786210 (-) 1746 WP_236749223.1 alkaline phosphatase D family protein -
  CBP33_RS03715 (CBP33_03715) hemL 786385..787695 (-) 1311 WP_086911437.1 glutamate-1-semialdehyde 2,1-aminomutase -
  CBP33_RS03720 (CBP33_03720) thiD 787679..788629 (-) 951 WP_086911438.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CBP33_RS03725 (CBP33_03725) - 788724..788897 (+) 174 WP_086911439.1 rubredoxin -
  CBP33_RS03730 (CBP33_03730) pilG 788957..789355 (+) 399 WP_086911440.1 response regulator Regulator
  CBP33_RS03735 (CBP33_03735) - 789355..789720 (+) 366 WP_086911441.1 response regulator -
  CBP33_RS03740 (CBP33_03740) - 789736..790263 (+) 528 WP_086911442.1 chemotaxis protein CheW -
  CBP33_RS03745 (CBP33_03745) - 790285..792573 (+) 2289 WP_086911443.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14626.82 Da        Isoelectric Point: 6.9234

>NTDB_id=230154 CBP33_RS03730 WP_086911440.1 788957..789355(+) (pilG) [Acidovorax carolinensis strain NA2]
MTTTGATFKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALAKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
DTPVVMLSSKDGVFDKARGRMVGCQEYLTKPFTKDQLLQAVQQFGNSQQGAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=230154 CBP33_RS03730 WP_086911440.1 788957..789355(+) (pilG) [Acidovorax carolinensis strain NA2]
TTGACTACAACAGGCGCAACTTTCAAAGTGCTCGTGGTGGATGACAGCAATACCATTCGCCGAAGCGCCGAGATTTTTCT
CAAGCAGGGAGGGCACGAGGTCCTGCTGGCAGATGATGGTTTTGATGCCTTGGCCAAGGTGAATGACTACCAACCGCAAC
TTATTTTCTGCGACATCCTGATGCCCAAGCTTGACGGGTATCAAACCTGCGCCATCATCAAGCGCAATGCCCGTTTTGCC
GATACTCCAGTGGTGATGCTGTCTTCCAAGGATGGCGTGTTTGACAAAGCGCGCGGCCGCATGGTCGGCTGTCAGGAATA
TCTCACCAAACCTTTTACCAAAGACCAGTTGTTGCAGGCGGTGCAGCAATTTGGCAATTCCCAACAAGGAGCCATGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

56.198

91.667

0.515

Multiple sequence alignment