Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CBP33_RS00940 Genome accession   NZ_CP021359
Coordinates   202224..203603 (+) Length   459 a.a.
NCBI ID   WP_086911001.1    Uniprot ID   -
Organism   Acidovorax carolinensis strain NA2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 197224..208603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBP33_RS00920 (CBP33_00920) - 197385..198269 (+) 885 WP_086910998.1 hypothetical protein -
  CBP33_RS00925 (CBP33_00925) - 198623..199606 (+) 984 WP_236749204.1 lytic transglycosylase domain-containing protein -
  CBP33_RS00930 (CBP33_00930) - 199757..201337 (+) 1581 WP_086910999.1 ABC transporter substrate-binding protein -
  CBP33_RS00935 (CBP33_00935) - 201434..202045 (-) 612 WP_086911000.1 glutathione S-transferase family protein -
  CBP33_RS00940 (CBP33_00940) radA 202224..203603 (+) 1380 WP_086911001.1 DNA repair protein RadA Machinery gene
  CBP33_RS00945 (CBP33_00945) - 203673..204107 (+) 435 WP_086911002.1 glycerate kinase -
  CBP33_RS00950 (CBP33_00950) - 204151..205101 (+) 951 WP_086911003.1 branched-chain amino acid transaminase -
  CBP33_RS00955 (CBP33_00955) - 205104..205310 (+) 207 WP_086911004.1 zinc-finger domain-containing protein -
  CBP33_RS00960 (CBP33_00960) - 205314..206129 (+) 816 WP_086911005.1 glycosyltransferase family 2 protein -
  CBP33_RS00965 (CBP33_00965) - 206129..207382 (+) 1254 WP_086911006.1 O-antigen ligase family protein -
  CBP33_RS00970 (CBP33_00970) - 207397..208371 (+) 975 WP_086911007.1 glycosyltransferase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48061.55 Da        Isoelectric Point: 6.9438

>NTDB_id=230149 CBP33_RS00940 WP_086911001.1 202224..203603(+) (radA) [Acidovorax carolinensis strain NA2]
MAKDKTLFTCTECGGTSPRWLGKCPSCGAWNTLIESVAEAGPGKNRYSGTQFAGLAQAQAVMPLAAIEATDIARTPSGID
ELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQALDALQRAGLPTLYVTGEESGAQVALRSRRLGLDHSQVNVLAEIQLEK
ILATIESMQPAVAVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRCAKASGVAIVLVGHVTKEGALAGPRVLEHMVDTVL
YFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHSEPVPGSCVMVTLEGTRPLLVEIQALVDSG
GPSPRRLSVGLDKDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLAITSSLRGKALPQGFIAFGEVGL
AGEVRPAPRGQERLREAAKLGFSIAVVPKANAPKKPIEGLTIHAVERVEEAMNVVRAMG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=230149 CBP33_RS00940 WP_086911001.1 202224..203603(+) (radA) [Acidovorax carolinensis strain NA2]
ATGGCCAAAGACAAAACCCTTTTTACTTGCACCGAATGTGGCGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCGTCGTG
TGGCGCCTGGAACACGCTGATCGAATCGGTGGCAGAGGCGGGGCCCGGCAAGAACCGCTACAGCGGCACGCAGTTTGCCG
GTCTGGCGCAGGCGCAGGCCGTCATGCCGCTGGCCGCCATCGAGGCGACCGACATTGCGCGCACGCCCAGCGGTATCGAC
GAACTGGACCGCGTGCTGGGCGGGGGGATCGTGGAAGGGGGCGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTC
CACGCTGCTGCTGCAGGCGCTGGACGCGCTGCAGCGCGCCGGCCTGCCCACGCTGTATGTCACCGGCGAAGAAAGCGGCG
CCCAGGTCGCGCTGCGTTCGCGCCGGCTCGGGCTCGACCATAGCCAGGTGAATGTGCTGGCCGAAATTCAGCTCGAAAAG
ATACTGGCCACCATTGAGTCGATGCAGCCCGCTGTGGCCGTGATTGACTCGATCCAGACGGTGTATTCCGATCAGCTGAC
CTCGGCACCCGGTTCGGTGGCCCAGGTGCGCGAGTGCGCGGCGCACCTGACACGCTGCGCGAAGGCGTCTGGCGTAGCCA
TCGTGCTGGTGGGGCATGTGACCAAGGAGGGCGCGCTGGCCGGCCCCCGCGTGCTGGAGCACATGGTGGACACGGTGTTG
TACTTTGAAGGCGACACGCACAGCCAGTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCCGTCAACGAGATCGG
CGTGTTCGCCATGACCGAAAAGGGTCTCAAGGGGGTCAGCAACCCCAGCGCCATCTTTTTGAGCCAGCACAGCGAGCCGG
TGCCGGGCAGCTGTGTGATGGTCACGCTCGAAGGAACCCGGCCCTTGCTGGTGGAGATACAGGCCCTGGTGGACAGCGGC
GGGCCGAGCCCGCGGCGTCTGAGTGTGGGCCTGGACAAGGATCGCCTGGCCATGCTGCTGGCTGTGCTGCACCGCCATGC
GGGGGTGGCCTGCATGGACCAGGACGTGTTTGTGAATGCCGTGGGCGGCGTGCGTATCAGCGAGCCCGCCGCCGACCTGG
CCGTGATGCTGGCCATCACCTCCAGCCTGCGGGGCAAGGCCCTGCCGCAGGGTTTTATTGCCTTTGGCGAGGTAGGGCTG
GCGGGCGAGGTGCGCCCCGCGCCCCGCGGTCAGGAGCGCCTGCGCGAGGCGGCCAAGCTGGGCTTCAGCATAGCGGTGGT
GCCCAAGGCCAATGCCCCAAAAAAGCCGATCGAGGGCCTGACCATCCATGCCGTGGAGCGGGTGGAAGAGGCCATGAACG
TGGTGCGGGCCATGGGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.571

99.129

0.481
  radA Streptococcus mitis NCTC 12261

46.358

98.693

0.458
  radA Streptococcus pneumoniae Rx1

47.178

96.514

0.455
  radA Streptococcus pneumoniae D39

47.178

96.514

0.455
  radA Streptococcus pneumoniae R6

47.178

96.514

0.455
  radA Streptococcus pneumoniae TIGR4

47.178

96.514

0.455
  radA Streptococcus mitis SK321

48.14

93.682

0.451

Multiple sequence alignment