Detailed information NTG0230138

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C5097_RS18830
• Genome accession: NZ_CP027105
• Coordinates: 3583294..3584286 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain RM14721
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3578294..3589286

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5097_RS18810 (C5097_18795)	otnK	3579069..3580331 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
C5097_RS18815 (C5097_18800)	ygbL	3580328..3580966 (+)	639	WP_020239554.1	aldolase	-
C5097_RS18820 (C5097_18805)	ygbM	3580971..3581747 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
C5097_RS18825 (C5097_18810)	ygbN	3581836..3583200 (+)	1365	WP_000104442.1	GntP family transporter	-
C5097_RS18830 (C5097_18815)	rpoS	3583294..3584286 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C5097_RS18835 (C5097_18820)	nlpD	3584349..3585443 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C5097_RS18840 (C5097_18825)	pcm	3585628..3586254 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C5097_RS18845 (C5097_18830)	surE	3586248..3587009 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C5097_RS18850 (C5097_18835)	truD	3586990..3588039 (-)	1050	WP_086625334.1	tRNA pseudouridine(13) synthase TruD	-
C5097_RS18855 (C5097_18840)	ispF	3588036..3588515 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C5097_RS18860 (C5097_18845)	ispD	3588515..3589225 (-)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=230138 C5097_RS18830 WP_000081550.1 3583294..3584286(-) (rpoS) [Escherichia coli strain RM14721]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=230138 C5097_RS18830 WP_000081550.1 3583294..3584286(-) (rpoS) [Escherichia coli strain RM14721]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715