Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C5097_RS18555 Genome accession   NZ_CP027105
Coordinates   3530952..3531467 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain RM14721     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3525952..3536467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5097_RS18530 (C5097_18515) ygaZ 3526351..3527088 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  C5097_RS18535 (C5097_18520) ygaH 3527078..3527413 (+) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  C5097_RS18540 (C5097_18525) emrR 3527504..3528034 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C5097_RS18545 (C5097_18530) emrA 3528161..3529333 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C5097_RS18550 (C5097_18535) emrB 3529350..3530888 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C5097_RS18555 (C5097_18540) luxS 3530952..3531467 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C5097_RS18560 (C5097_18545) gshA 3531617..3533173 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  C5097_RS18565 (C5097_18550) yqaA 3533246..3533674 (-) 429 WP_001287454.1 YqaA family protein -
  C5097_RS18570 (C5097_18555) yqaB 3533671..3534237 (-) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C5097_RS18600 (C5097_18585) csrA 3535695..3535880 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=230135 C5097_RS18555 WP_001130211.1 3530952..3531467(-) (luxS) [Escherichia coli strain RM14721]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=230135 C5097_RS18555 WP_001130211.1 3530952..3531467(-) (luxS) [Escherichia coli strain RM14721]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731